Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3343 ATGGATAGGAAAGAAAGCCTTTGTACTAACACCTGGACAGAGCCGTCTTCCTTAACTAATTGTGGAAATGGATTGCAGACAAACTTGTCCTCTGATCCTTCAATTTCAGATTATGGGGAAAGGGTAGAAGCACCTTTCAAAGATTTTAACCAACCCTCTCAAATGCAGTCTCTACTTTCCAAGAATGTCATTAAGATTGCTGATCAAGAAAACTGTCCACCAAGTGACTCATCTCAAACCAGTATACTCCAAAATTGGGATGCCAGTGTGATGTTAAATAATCTTTCCTTCTTGGAAAAAAAGGTTCATCAACTTCAGGAGTTAGTGTGCTTGATTGTTAGTAAAAAGGGCCAAACTTTCGGACAGCCTAATGAACTGTTAACTCAGGAACAACAGCTCATTACTGCTGATCTTACATCAATTATTGTTCAGTTGATCTCTTCTGCAGGTAGTCTTCTCCCTTCTGCCAGACATACCCTTACAAGTACCAGTCCATTGGTTCAACAGCTTTGCCAGCTTCAGGGGATTACGGTTCCTTTTGCGTCCGGCTCAGGCCAAAGTAGTGTTCAACCACAAAATAATGGGGCAGATAAATTATCTGAGAGCTCACTGAAGAATGGTCTACCAAATAATTGTGATCTGGAGCAAAAGTACAATGTGGAAGAACATGAATTGAAGGATGAGGAAGATGCTGATGATGGAGAAAACCTCCTGCCTGGTTCCTATGAGATTTTACAATTAGAAAAAGAAGAAATCCTTGCCCCACATACACATTTCTGCACAATTTGTGGAAAGGGATTCAAGAGAGATGCAAATCTCCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACCGCAGCTGCTCTTGCAAAACCTCATAAAGAATCTGAGTCACAACCTAAGCTTATCAAGAGGTATTCTTGCCCCTATGCTGGCTGCAAGCGTAACAAGGATCACAAAAAATTTCAACCTCTGAAGACAATATTGTGTGTCAAAAATCATTACAAAAGAACACACTGTGACAAGAATTACACTTGCAGCAGATGCCACATAAAGAAGTTTTCAGTCATGGCGGATCTTAAAACTCATGAAAAGCACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAGGACAAGCTTTTTGGACATATTGCTCTTTTCCAAGGCCATACACCGGCCATTCCCATGGAAGACAATAAAAGAACAACAGGCCTTCCAGACCAAGATAATAGCAAAGCAGAAGTTATGAGCTTCAGTTCTGGATTAAATCCTTCAACTGAAAATGGAGTTCAAAATGTCATGGATGTAAAAGGAAACATTGATGATCCTATTACTTGTTTCTCTCCATTGAACTTTGAAGCAAACTTTGGTGGCTTTAATGAATTCACTCAACCTCAATTTGATGATGGCTCGGAAGGTTCTTTCTCTTTTCTCATCCCTGGATCTTTCAAATCTGGAGAATTATCAAGCTCTGATAATGTGGTTTGA 1509 0.4023 MDRKESLCTNTWTEPSSLTNCGNGLQTNLSSDPSISDYGERVEAPFKDFNQPSQMQSLLSKNVIKIADQENCPPSDSSQTSILQNWDASVMLNNLSFLEKKVHQLQELVCLIVSKKGQTFGQPNELLTQEQQLITADLTSIIVQLISSAGSLLPSARHTLTSTSPLVQQLCQLQGITVPFASGSGQSSVQPQNNGADKLSESSLKNGLPNNCDLEQKYNVEEHELKDEEDADDGENLLPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKESESQPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKNYTCSRCHIKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPMEDNKRTTGLPDQDNSKAEVMSFSSGLNPSTENGVQNVMDVKGNIDDPITCFSPLNFEANFGGFNEFTQPQFDDGSEGSFSFLIPGSFKSGELSSSDNVV* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3343 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 489 IPR044300 GO:0010044|GO:0010447
Ahy5g3343 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 285 IPR013087 -
Ahy5g3343 502 SUPERFAMILY beta-beta-alpha zinc fingers 256 284 IPR036236 -
Ahy5g3343 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 489 - -
Ahy5g3343 502 MobiDBLite consensus disorder prediction 183 212 - -
Ahy5g3343 502 SMART c2h2final6 258 280 IPR013087 -
Ahy5g3343 502 SMART c2h2final6 345 367 IPR013087 -
Ahy5g3343 502 SMART c2h2final6 307 340 IPR013087 -
Ahy5g3343 502 Gene3D Classic Zinc Finger 243 318 - -
Ahy5g3343 502 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3343 Ahy-Chr5 115322291 115324766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3343 225 486 C2H2 Transcription Factor Family AT1G34370 69.818 9.15e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy5g3343 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3343 - - gmx:100170687 721.465