Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3331 ATGTTTGGGGAGTCATCAGGAAGGTGGTTGGATTCTGAATTATGGCATGCTTGTGCTGGTTCCATGGTTCAAATGCCACCTCTGAACTCAAAAGTTTTGTACTTTCCACAAGGGCATGCAGAGCATGCTCATGGAGGAAAAGTGGATTTCACAACAAGAATCCCTTCTTTCATTCCATGCTGGCTTTCTGGACTCAAATACATGGCAGATTCTGATACTGATGAGGTCTTTGTTAAGTTGTCTTTGACCCCTCTCACTCAAGAAAACACCAATGCATTGTTGATGGATTTGGAAGATGGTGGTGATGATTGTGGTAACAACAATGGAGGAGTTGTTGAGGGGGGTAATCAAGAGAAACCTGCTTCATTTGCAAAGACATTGACACAATCTGATGCCAACAATGGTGGAGGGTTCTCAGTGCCTCGTTACTGTGCTGAAACCATATTCCCAAGGCTGGATTATTCTGCTGATCCTCCTGTTCAGAACATTGTTGCCAAAGATGTTCATGGAAATTGCTGGAAGTTTAGGCACATCTATAGAGGGACTCCTCGCAGGCACCTATTGACCACTGGATGGAGCAATTTTGTGAGCCAGAAGAAGCTTGTAGCTGGTGATTCCATTGTGTTCTTGAGAGCTAAGGATGGTGATCTGTGTGTTGGGATAAGGAGGGCCAAGAAGGTGGCAGTTGGAGGCGGCGAGGTGTCGGTGTCATCGGTGGTTGAAGCTGTGAGTTGTGGTGTTAATGGAAGGCCATTTGAGGTTGTGTACTATCCAAGGGGAAGCTCACCTGAGTTCTGTGTTAAGGCCTCAGTTGTGAGAGATGCAATGAAAGTGAGGTGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAGACTGAGGATTCTTCTAGAATCAGTTGGTTCATGGGAACCATTTCTTCTGTTCAGCTTCTTGATCCCATTCATTGGCCTAATTCTCCATGGCGTCTTCTGCAGGTGGTGTGGGATGAACCAGAATTACTACAGCATGTGAAGTGTGTAAATCCTTGGTTGGTTGAATTAGTCTCAGACATTCCCACCTACCATCTTTCTCCATTCTCTCCAACAAGAAAGAAACCAAGGTTTCTTCACAACCAAGATTTTCACCTCATCAATAACCAACTTCCAATAATGCCAGGATTTCCCAGCAATTATAGTTACAGTAATGATAATCATCTTGTTATGAATCATTCTTCTAAGTCCTTAATGATGAACATTCAAGAGAATAACAGTATTGCAGGCATACAGGGAGCCAGGCATGCTCAACTTCTTGATCTGTCTCCATCTGATTATCCTTTCTTCAACAAGCTTCCATCACAATCACAATCACAATCACAATCACAATCACACAATATGCATCTTATTAGTCCCCCTTATTGTGGGACCTATTGTTGGGAATAA 1419 0.4362 MFGESSGRWLDSELWHACAGSMVQMPPLNSKVLYFPQGHAEHAHGGKVDFTTRIPSFIPCWLSGLKYMADSDTDEVFVKLSLTPLTQENTNALLMDLEDGGDDCGNNNGGVVEGGNQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNIVAKDVHGNCWKFRHIYRGTPRRHLLTTGWSNFVSQKKLVAGDSIVFLRAKDGDLCVGIRRAKKVAVGGGEVSVSSVVEAVSCGVNGRPFEVVYYPRGSSPEFCVKASVVRDAMKVRWCSGMRFKMPFETEDSSRISWFMGTISSVQLLDPIHWPNSPWRLLQVVWDEPELLQHVKCVNPWLVELVSDIPTYHLSPFSPTRKKPRFLHNQDFHLINNQLPIMPGFPSNYSYSNDNHLVMNHSSKSLMMNIQENNSIAGIQGARHAQLLDLSPSDYPFFNKLPSQSQSQSQSQSHNMHLISPPYCGTYCWE* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3331 472 PANTHER AUXIN RESPONSE FACTOR 16 233 456 - -
Ahy5g3331 472 PANTHER AUXIN RESPONSE FACTOR 16 6 230 - -
Ahy5g3331 472 SMART B3_2 123 225 IPR003340 GO:0003677
Ahy5g3331 472 SUPERFAMILY DNA-binding pseudobarrel domain 117 224 IPR015300 -
Ahy5g3331 472 Gene3D - 279 352 - -
Ahy5g3331 472 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677
Ahy5g3331 472 Pfam Auxin response factor 248 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy5g3331 472 CDD B3_DNA 122 223 IPR003340 GO:0003677
Ahy5g3331 472 Gene3D - 121 225 IPR015300 -
Ahy5g3331 472 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Ahy5g3331 472 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 230 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy5g3331 472 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 233 456 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3331 Ahy-Chr5 115265529 115267919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3331 8 436 B3 DNA Binding Superfamily AT4G30080 56.568 8.26e-174 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy5g3331 B3 1.50E-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3331 - - ahf:112803082 931.398