Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3330 ATGGTCGCTACTACAAATAACGGATTCCGAAACCATTCACATTTCATTCATTCACCAAAACAAAACAAACTACTCATAACTTCTTTGCTTCTTTTCCTTTCTCATTTTCTTACACTTACACCGCAACATTTTCTCTTCTCTTTTTCTCGTTTCAATTTTCTCAGGAAAATCACAGACAAAATGATTGAGCCAAACTTCGTCGACGACGTAGACTGCGGCAGCTTCTTCGACCACATTGACGACCTCCTCGACTTCCCCGCCGACGACGCTGCCACCGCCGACGCCTCCTTGCCTGTCGCTGCCGCCTGCGCCGGAAACATTGAAACGCCGGCGAGCTTCTGGTCTTCCGAGTCCAACAGCGGTCTGCCGGCCACAGATACAGCCTTTCCCCGCGGTGACGCCGTGACGGACCTCTCGGCGGAGATTTCCGTTCCGTATGAAGACATTGTGCAGTTGGAATGGTTATCCACTTTTGTGGAGGACTCTTTCTCCGGTAGGAGCCTTACCATGAAGAAGGTGGAGCTCCCCACCACCATCACCACAATCAAGGAGGATTTGACTCGTTCACAATTCCGGACATCAAGTCCAGTTTCTGTCCTAGAGAGCAGCAGCTCTTGCTCCAGGGAGAAGGTTGTGGCTCAATGCCCGGAGATTTATATCCCAGTGGTGCCTTGTGGACGTGCGCGAAGCAAGCGGCAGCGCCCGTCGAGCTTCAAGGCACATCCGGTGATGCAACTCATCTCCCCTGCTTCCTCTGTTGGTGAGAACACACAGCCTAATGTCATTCTTAAGGCTTCTTCAGATTCTGAGAATTTCGCGGAGTCTCATCCTGCAATCAAGTTAGCAAAGCAAGCTTCTGGAGAGCACAAGAAGAAAAAGAAAACTAAAGCACCTAATCCTTTAACTGAAGATGATGATCATGATACTAACCAGAATAGTGCGGCAGCTAGGAAATGCATGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCCTGTGGTGTTCGCTACAAGTCGGGCCGCCTCTTCCCCGAATACCGGCCTGCTGCCAGTCCAACGTTCTGCCCTGCCGTGCACTCCAATTCACACAAGAAGGTCCTTGAAATGAGAAACAAATTTGGCTTCTCAACTGATTCAGCTGCTTCTCCTGAACTCATTCCAAACACTTCAAGACTTGGATTGGAATACATGTGA 1227 0.4996 MVATTNNGFRNHSHFIHSPKQNKLLITSLLLFLSHFLTLTPQHFLFSFSRFNFLRKITDKMIEPNFVDDVDCGSFFDHIDDLLDFPADDAATADASLPVAAACAGNIETPASFWSSESNSGLPATDTAFPRGDAVTDLSAEISVPYEDIVQLEWLSTFVEDSFSGRSLTMKKVELPTTITTIKEDLTRSQFRTSSPVSVLESSSSCSREKVVAQCPEIYIPVVPCGRARSKRQRPSSFKAHPVMQLISPASSVGENTQPNVILKASSDSENFAESHPAIKLAKQASGEHKKKKKTKAPNPLTEDDDHDTNQNSAAARKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRNKFGFSTDSAASPELIPNTSRLGLEYM* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3330 408 MobiDBLite consensus disorder prediction 282 312 - -
Ahy5g3330 408 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 316 376 - -
Ahy5g3330 408 PANTHER GATA TRANSCRIPTION FACTOR 61 408 - -
Ahy5g3330 408 MobiDBLite consensus disorder prediction 297 312 - -
Ahy5g3330 408 ProSiteProfiles GATA-type zinc finger domain profile. 313 349 IPR000679 GO:0006355|GO:0043565
Ahy5g3330 408 Pfam GATA zinc finger 319 352 IPR000679 GO:0006355|GO:0043565
Ahy5g3330 408 Gene3D - 313 363 IPR013088 GO:0006355|GO:0008270
Ahy5g3330 408 PANTHER GATA TRANSCRIPTION FACTOR 8 61 408 - -
Ahy5g3330 408 SMART GATA_3 313 363 IPR000679 GO:0006355|GO:0043565
Ahy5g3330 408 CDD ZnF_GATA 318 375 IPR000679 GO:0006355|GO:0043565
Ahy5g3330 408 ProSitePatterns GATA-type zinc finger domain. 319 344 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3330 Ahy-Chr5 115242738 115246924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3330 79 383 C2C2-Gata Transcription Factor Family AT4G32890 35.831 3.73e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy5g3330 GATA 7.40E-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3330 - - gmx:100792644 415.231