Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3286 ATGAGAAGAAAAGGGAGAGAGCTTCTTAACCTATGTATCTCTCTAAGCTCCCCATTGAAGCCTGAACCACGTGCATCTTCTTTTCATGGTGCTTCTAGAACTTTCTCACCATTTTCCGCTTCTTCTTCTTCCTTCTCCTCCTCCTCCTCCTCCAGCACCGTAACCCCTTTTGTTGAAGATGAAAAGGCTTCGGCAGCGTCCAAGACGCAGAGGGAATCAATGATTTTGGAAGAGTTCAGACAAAGGAAGCTCAAAGGGACTTCATCAAGTTCTTCTCCTGATGGCGGTGCTGAGAAGAAAGAGGGGGAGTCCACTATGGTGGTTTCCAACTTCAGGGAGTTGGGTGTGGCTGAGGAGCTTGCTGAGGTTTTGGAAAAGATTGGTGATGGTGTTCCGAGTGAGATACAATGTGTTGTTATTCCAGCTGTTTTGGAAGGGAAGAGTTTATTGTTGAGTTCACCCGCTGAACCTGATCGAACTTTGGCTTACTTGTTGCCCCTTATTCAGCTGCTGCGACGTGGCGAGGTTGGTTTGGATTCAAAGCATCCCAGAGCCATTGTGCTTTGTGCTACGGAGGAGAAAGCTAATGAGTGTTTTAGTGCTGCAAAATATATCATGGAGATTGCGGAAGCGAAGTTGGCAAAGCAACGTTCTTCCCCAGATAATGAGCATTCGAATGTCTCAATTGGTCTTCTAGTCGGAACCCCTTCTGAGATTATTCAGTACATTGAAGAGGGAAGTGTTGTCCCTGCTGAAATAAGATATATGGTTTTGGATGATGTAGATTTCATGCTTGGTAGTGGCCTTGATTCTAACATCCACAAGATTCTCGAACCATTGCAAGATCATGAATCAAAATCTTCTTACAAAAGATTGCAAACCGTCCTAGTTACATCGCCGATCACCGAGGTTTTGGGTGATGAATCCCCCATTGTGAAGCATCTTGAGCGTGATCATGCTGGAAATATTTCTGCAATCTCTTTGGAAATGGATCAAGGAGAAGTGTTCCAATATACAGAGTCCCTGGATGCTCTTAGGAAAAAAGTGATAGAAGCCATGGACACCCTTGTGTAA 1074 0.4479 MRRKGRELLNLCISLSSPLKPEPRASSFHGASRTFSPFSASSSSFSSSSSSSTVTPFVEDEKASAASKTQRESMILEEFRQRKLKGTSSSSSPDGGAEKKEGESTMVVSNFRELGVAEELAEVLEKIGDGVPSEIQCVVIPAVLEGKSLLLSSPAEPDRTLAYLLPLIQLLRRGEVGLDSKHPRAIVLCATEEKANECFSAAKYIMEIAEAKLAKQRSSPDNEHSNVSIGLLVGTPSEIIQYIEEGSVVPAEIRYMVLDDVDFMLGSGLDSNIHKILEPLQDHESKSSYKRLQTVLVTSPITEVLGDESPIVKHLERDHAGNISAISLEMDQGEVFQYTESLDALRKKVIEAMDTLV* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3286 357 MobiDBLite consensus disorder prediction 29 58 - -
Ahy5g3286 357 SUPERFAMILY PABC (PABP) domain 304 356 IPR036053 GO:0003723
Ahy5g3286 357 Gene3D - 55 306 IPR027417 -
Ahy5g3286 357 Pfam DEAD/DEAH box helicase 134 298 IPR011545 GO:0003676|GO:0005524
Ahy5g3286 357 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 6 356 - -
Ahy5g3286 357 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 6 356 - -
Ahy5g3286 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 303 IPR027417 -
Ahy5g3286 357 Gene3D - 307 357 - -
Ahy5g3286 357 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 319 IPR014001 -
Ahy5g3286 357 MobiDBLite consensus disorder prediction 13 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3286 Ahy-Chr5 114951275 114953561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3286 310 356 Eukaryotic Initiation Factors Gene Family AT1G49760 48.936 5.20e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3286 - - gmx:100800575 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3722 15 160015163 160017506 Ahy5g3286 5 114951275 114953561 hybridization