Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3285 ATGGCGGGAGCTACAGCAAGAACCCTCTTCTTCACCGTCTTTCTCTCTTCCTCCTCCTTCACGCGCCTCTCTCGTCGCTCCAATCTCATCCCACTCCTCACGCGCTCTAAGTCCATCATCAATGTTCCGCCGCCACGGTTCAGGACCTTGTGTTCCGTCGCCACCGCACCGGAAACTTCGGACACCGATCACCAGACGAAGCACTCCGTCCTCCTCGAGAAGCTCAGAGCGAGACATCTCAAGGACAGTGCAAAGAGCTCAGAACTCAAGAGTAAGGACCAAACAAAGAAGAATTCTTCTTCTTCTTCTGGTGAAAGTGAGAATTTTGATGGGGTGGTGGTGAAAAAGAATAAGCTTGTTGGGAGTTTTGAAGAATTGGGTTTGAGTGAAGAGGTTATGGGTTCTGTTAGGGAAATGGGTATTGAAGTTCCCACTGAGATTCAGTGCATTGGTGTTCCTGCTGTCTTGCAAGAGAACAGTGTTGTGTTGGGTTCTCACACTGGCTCTGGCAAAACCCTTGCTTACTTGCTTCCCCTTGTTCAGTTGCTAAGACGGGACGAACAGTTGAATGGAATACAGTTAAAGCCCAGGAGACCTTGTGCTGTTGTGCTATGCCCTACGAGGGAGTTGTGTGAGCAGGTTTTTCGAGTTGCGAAATCAATTAGCCATCATGCACGGTTCAGGTGCACAATGGTAAGTGGTGGTGGCCGTATTAGGCCTCAAGAAGATTCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGAAGGATTCTTCAACATATTGAGGAGGGCAACCTGGTGTATGGCGACATCAAATACTTGGTATTGGATGAGGCAGATACAATGTTTGATCGTGGCTTTGGTCCTGATATACGCAAATTTCTGGCCCCATTGAAACATCGTGCGTCAAAGTCTGATGGCCTAGGTTTTCAGACCGTCTTGGTAACTGCAACAATGACAAAGGCTGTGCAAAAGCTGATTGATGAGGAGTTTCAGGGCATTGTACATCTGCGAACATCAACATTGCATAAAAAGATTTCTTCTGCTCGTCACGATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTGGAAGCATTACTTCAGGTACTTGTGCCAAGCCGAGCAAAAGGCAACAAGGTGATGGTTTTTTGCAATACTTTGGACTCTAGCCGTGCGGTGGATCACTACCTTGTTGAAAATATGATTCCTACTGTCAACTACCATGGGGAAGTACCAGCAGAGCAAAGGGTTGAAAACCTCAATAAGTTTAAGAATGACATTGATGATCGTCCAACATTAGTTTGCACAGACTTGGCCGCTAGGGGTCTGGACTTGGATGTAGATCATGTTGTTATGTTTGACTTCCCCTTGAACTCTATTGATTACCTTCATCGGACTGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACCAGTTTGGTTACAAAGAAGGATTTGATCTTGGCCACTAGAATAGAGGAGGCAATGAGGAAGAATGAGAGTTTGGAAGCTATCACCAAAGAAGGAGTACGAAGGGATATCGCCAGGACCCAAGTTAATGGGCAGAGTGGGAAGGACAGAGAACTAGTTAAAGTTTCTAAAGTTAAGAACAATCCTGGTGGACGTGCCAGTTCAGGGAATAAAGGATCGGATTTGAAATCCCGAAAAGGATCATCTTCAGAAAGATCTATGAAGAAAGGGATTAAGGTTTCAAATTCTGTAAAATCCTCCAGTGCAAATGGCTCAAGAAAAGCTTCTTCAGGGTATAAGCAAACAAGTAAAAGGACCAGTGCCACCAAATCGACAAATTCTAAACTCAGTGTTGTCGGGTTTAGGGGTCGGAACTCATCATCAAACCCCTTGTGA 1875 0.4544 MAGATARTLFFTVFLSSSSFTRLSRRSNLIPLLTRSKSIINVPPPRFRTLCSVATAPETSDTDHQTKHSVLLEKLRARHLKDSAKSSELKSKDQTKKNSSSSSGESENFDGVVVKKNKLVGSFEELGLSEEVMGSVREMGIEVPTEIQCIGVPAVLQENSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGIQLKPRRPCAVVLCPTRELCEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRILQHIEEGNLVYGDIKYLVLDEADTMFDRGFGPDIRKFLAPLKHRASKSDGLGFQTVLVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLVPSRAKGNKVMVFCNTLDSSRAVDHYLVENMIPTVNYHGEVPAEQRVENLNKFKNDIDDRPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDLILATRIEEAMRKNESLEAITKEGVRRDIARTQVNGQSGKDRELVKVSKVKNNPGGRASSGNKGSDLKSRKGSSSERSMKKGIKVSNSVKSSSANGSRKASSGYKQTSKRTSATKSTNSKLSVVGFRGRNSSSNPL* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3285 624 MobiDBLite consensus disorder prediction 519 624 - -
Ahy5g3285 624 Pfam Helicase conserved C-terminal domain 364 475 IPR001650 -
Ahy5g3285 624 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 45 550 - -
Ahy5g3285 624 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 517 IPR001650 -
Ahy5g3285 624 Pfam DEAD/DEAH box helicase 145 328 IPR011545 GO:0003676|GO:0005524
Ahy5g3285 624 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 339 IPR014001 -
Ahy5g3285 624 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 121 149 IPR014014 GO:0003724
Ahy5g3285 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 495 IPR027417 -
Ahy5g3285 624 SMART helicmild6 393 475 IPR001650 -
Ahy5g3285 624 MobiDBLite consensus disorder prediction 567 624 - -
Ahy5g3285 624 MobiDBLite consensus disorder prediction 82 108 - -
Ahy5g3285 624 Gene3D - 78 340 IPR027417 -
Ahy5g3285 624 Gene3D - 350 517 IPR027417 -
Ahy5g3285 624 SMART ultradead3 140 359 IPR014001 -
Ahy5g3285 624 CDD SF2_C_DEAD 352 484 - -
Ahy5g3285 624 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 45 550 - -
Ahy5g3285 624 CDD DEADc 132 331 - -
Ahy5g3285 624 MobiDBLite consensus disorder prediction 541 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3285 Ahy-Chr5 114946794 114950641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3285 120 497 Eukaryotic Initiation Factors Gene Family AT3G19760 29.016 3.04e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3285 - - gmx:100805709 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3721 15 160010325 160014525 Ahy5g3285 5 114946794 114950641 hybridization