LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy5g3245	ATGATAATGGCGGAACCATCATCGTCATCTTCTTCTTCCTTCCCATACGAAGTCTTCCTCAGTTTCAGAGGAGAAGATACTAGAAACGGTTTCACCAGTAATCTCTACCATGCACTGGATCAAAAGGGGATCCACACCTTCATTGATGATGAGGAGCTTCAAAAGGGGGAAGAAATTACTCCAGCACTTGTGAAGGCTATTCAAGAATCTAGGATTGCCATCGTTGTGTTCTCTAAGAACTATGCCTCATCTGCTTTCTGTTTGGACGAGCTTGCAAAGATTCTTGAGCTGTTGAAACTTGAAGGAAGATTGGTTTGGCCAATCTTTTATGATGTGGATCCATCAGATGTTCGCCATCAGAAAGGTAGCTATGCGGGGGCATTAGCAAAACATGAAGAACGGTTCCAGAATGATGACAATGGCAAGGTACAAAAATGGAGGAATGCTCTACGTGAAGCAGCTAATTTGTCCGGTTCACATTTCAAACCAGGGTCTCAACAGGAATACAAGTTCATTGAAAACATTGTTAGTGACATCCCCAAAAAGCTGAATTACACTCCTTTACATGTTGCTGACAACCCGGTTGGCCTGGAATCACCAGTGCTAGAAGTGAAGTCTCTGCTACAACTTGGGTCTAATAATAATAAAGATGGAGGAGTACACATGATTGGGATTTGTGGAAGTGGGGGAATAGGTAAAACAACACTTGCAAGAGCTGTGTATAACTCTGTTGCTGATCAATTTGATGGTTTGTGTTTTCTTGCTGATGTTAGAGAAAATGCAATCAACAAGAATCATGGTCTTGCACAACTCCAAGAGACACTTCTTTATGAAGTTCTTGATGAGAGTAATATAAGAATAAGAGATGTCAACAGAGGGATTGCAATTATAAAAAGGAGGCTTCAACAAAAGAAGATTCTTTTGGTTCTTGATGATGTTGATGACTTAACCCAGTTAAGGGCTATGGCCGGAGGCGATGATTGGTTCGGTTCAGGTAGTCGGATAATTATCACTTCTAGGGACAAACATTTGTTAGAAGCACAATATGGGATGAATCCAAACAAGATTTATGAGGTCAAAGAGTTAAACAAAAAAGAAGCTCTTGAATTGTTCTGTTGGAAGGCCTTTAGAAGCAACAAAGTTAAGTCAGGGTATGAAGATATTTCCAACCGTGTTCTTTCTTATGCTGGTGGTGTTCCTTTGGCTTTGGAAGTAATAGGCTCTAACTTGTATAACAAGAGCATAGATCAATGGAGCTCTGCATTAGATAAGTACAAAAAAATTCCCATTAAGAAGATTCAAGAAGTGCTCGAGGTAAGTTATGATGGACTACATGAAGATGAGAAGAGTATTTTTCTTGATATAGCTTGTTTCTTCAACAAGGAAAAGATATCATATGTGAAGCAAATGCTACATGTCCGTGGTTTCCACCCTGAAGATGGTATTGACGTTTTGATCGACAGATCTTTGATGAAGATTGACAAGAATAATAATTGTGTGAGAATGCATGATTTGATTCAAGATATGGGTAGAGAAATTGTTAGAAGGGAATCAACTTCTAAGCCTGGCAAACGTTCTAGACTATGGAATGATGAGGACATTGTTCATGTTCTAGAAAATGACATGGGAAGTGATAGAGTTGAAGTCATAATTTTGCACTCAAGCAAGCGTAGAGTGAATTGGAATGGAAAAGCATTCAAGAAAATGAGGAATCTCAAAGTTCTCATATTCTGGGATGTACATTTTTCAGTTGGTCCTGATCATCTGTCAAACAGTTTAAGAGTGTTGGAGTGGGATGGATATCCATCACCATCATTACCCTCTGATTTTCATCCCACTAAACTCTTCATACTCAATTTGTGCAACAGTTCTCTCAAATTGGACAATCCACTCAAGAATTTCAATTCCTTGAGTTTCATGGATTTTGGAGAGTGTGAATTCTTGACAGAAGTACCCGACCTTTCAGGAGTCCCAAATTTAGGAGCACTGTGTCTTGATAACTGCCGAAATTTAGTTAAAGTCCACAGGTCAGTTGGATTTCTGGAGAAATTGATTTTGCTGAGTGTTCAAGGATGCACCAAGCTCCGCACTCTCGTAGACGAAATCAATCTTCCATCTCTTGAGACTCTGGACCTCAGTGGCTGCACAAGCCTTGTGTGCTTCCCAGAAATCGTAGCAACTATGGAAAACATTCGAGTAATTTACTTAGACAGCACCGCCATATATGATTTGCCACTCACCATGTTCAATCTTGTTAGCCTGGAGCGCTTGTATCTCAGGAACTGCAGAGATCTGAAAAGTCTACAAGGCTGCATTCGCTTGCTACCAAAACTCGAGGTCGTGATTTTTCCGAAACAAAGAGGATTTCGATTGAATTCCGTGGTACACGGATTTGAGCAAAAGATATCATCAGAGTTCATGATTCACCACGGTCCTCGACCGCTGGTTCCATGGGAAGCTTGTTGCACAGTCTCCAGTGATTCGAATCTCATCCAATCATCTCACCATTGGCGCCGCCATATTTCGCCGGAAGAAGAACGCGGCGCCGGATCTGAGGGTGCATCGAGTGTGAGCTTCAGGTACCGGAGAAAACTCCCGGGGGTAATCGGCGCGTTGTTTACGACTGAAACAACGGACATTGACACCTTTGGCTCTGTTCTAGAGTTTAGGGTTCTTGTGTTGGTGAATCGCAGTTACATGTTCTCTTCGTCGAGTGTTTACGTAATCTCTGAGACAAGAAGGACACAGCCATTACTGGTGAATGTAATTCTCCGCACACTTCAAGGCCACGGCGAGCGATATGTTTTCAGATCGGAGTCGGAGTCGGAGAATGAATGGAATCTGGTGCAGATTGTTGGCGAGATGTATTTTCACAGGCCGTGTACGGAGGGGGAGGGAAAGAACACGGCGGTGGGAGCAGTTATGAAACGGAGCAGCCTTGTTTTTGACACGGAATATTGTTGCATGGAGGATATTCAATATTCGAACGGTGACACGTGTGAAAGTGATGCCCTTCCGGGAGTAACTTATATCGATTCGCTGACAAAGGAGAGCAATCTAAGGGAGCAACTGTACATATTGTACAAGAAATATTATTACAGGGAGGATATTCAATATTCGAACGATGACCCGCGTGAAAGTGATGCCCTTCTCGCAAGAATATCGGTTGGCTGA	3174	0.4212	MIMAEPSSSSSSSFPYEVFLSFRGEDTRNGFTSNLYHALDQKGIHTFIDDEELQKGEEITPALVKAIQESRIAIVVFSKNYASSAFCLDELAKILELLKLEGRLVWPIFYDVDPSDVRHQKGSYAGALAKHEERFQNDDNGKVQKWRNALREAANLSGSHFKPGSQQEYKFIENIVSDIPKKLNYTPLHVADNPVGLESPVLEVKSLLQLGSNNNKDGGVHMIGICGSGGIGKTTLARAVYNSVADQFDGLCFLADVRENAINKNHGLAQLQETLLYEVLDESNIRIRDVNRGIAIIKRRLQQKKILLVLDDVDDLTQLRAMAGGDDWFGSGSRIIITSRDKHLLEAQYGMNPNKIYEVKELNKKEALELFCWKAFRSNKVKSGYEDISNRVLSYAGGVPLALEVIGSNLYNKSIDQWSSALDKYKKIPIKKIQEVLEVSYDGLHEDEKSIFLDIACFFNKEKISYVKQMLHVRGFHPEDGIDVLIDRSLMKIDKNNNCVRMHDLIQDMGREIVRRESTSKPGKRSRLWNDEDIVHVLENDMGSDRVEVIILHSSKRRVNWNGKAFKKMRNLKVLIFWDVHFSVGPDHLSNSLRVLEWDGYPSPSLPSDFHPTKLFILNLCNSSLKLDNPLKNFNSLSFMDFGECEFLTEVPDLSGVPNLGALCLDNCRNLVKVHRSVGFLEKLILLSVQGCTKLRTLVDEINLPSLETLDLSGCTSLVCFPEIVATMENIRVIYLDSTAIYDLPLTMFNLVSLERLYLRNCRDLKSLQGCIRLLPKLEVVIFPKQRGFRLNSVVHGFEQKISSEFMIHHGPRPLVPWEACCTVSSDSNLIQSSHHWRRHISPEEERGAGSEGASSVSFRYRRKLPGVIGALFTTETTDIDTFGSVLEFRVLVLVNRSYMFSSSSVYVISETRRTQPLLVNVILRTLQGHGERYVFRSESESENEWNLVQIVGEMYFHRPCTEGEGKNTAVGAVMKRSSLVFDTEYCCMEDIQYSNGDTCESDALPGVTYIDSLTKESNLREQLYILYKKYYYREDIQYSNDDPRESDALLARISVG*	1058

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy5g3245	1057	PRINTS	Disease resistance protein signature	222	237	-	-
	Ahy5g3245	1057	PRINTS	Disease resistance protein signature	300	314	-	-
	Ahy5g3245	1057	PRINTS	Disease resistance protein signature	702	718	-	-
	Ahy5g3245	1057	PRINTS	Disease resistance protein signature	396	410	-	-
	Ahy5g3245	1057	Pfam	TIR domain	16	186	IPR000157	GO:0007165
	Ahy5g3245	1057	Gene3D	-	187	351	IPR027417	-
	Ahy5g3245	1057	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	17	711	-	-
	Ahy5g3245	1057	SUPERFAMILY	L domain-like	559	783	-	-
	Ahy5g3245	1057	Pfam	NB-ARC domain	216	441	IPR002182	GO:0043531
	Ahy5g3245	1057	SMART	till_3	15	156	IPR000157	GO:0007165
	Ahy5g3245	1057	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	158	IPR035897	-
	Ahy5g3245	1057	SMART	AAA_5	219	362	IPR003593	-
	Ahy5g3245	1057	Gene3D	-	361	445	IPR042197	-
	Ahy5g3245	1057	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	711	IPR044974	GO:0006952
	Ahy5g3245	1057	Gene3D	Ribonuclease Inhibitor	541	800	IPR032675	-
	Ahy5g3245	1057	ProSiteProfiles	TIR domain profile.	14	183	IPR000157	GO:0007165
	Ahy5g3245	1057	SUPERFAMILY	"Winged helix" DNA-binding domain	431	539	IPR036390	-
	Ahy5g3245	1057	Gene3D	-	9	186	IPR035897	-
	Ahy5g3245	1057	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	455	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy5g3245	Ahy-Chr5	114496440	114500959	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy5g3245	1	781	WRKY Transcription Factor Family	AT4G12020	33.582	2.01e-99	343

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy5g3245	-		-	ahf:112802989	2088.92