Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3240 ATGCAGCTTGAGGACTCATCCATCCTCTCTCTCATCAATAATAAGCCAGTTATGGCAGTTACGGCGGTGGCGGCACCGGAAGAAGATGGTGTCAAGGGTGGTGGTGAAGTGGTGGTTGGTATGGAAGAAGAAGAAGAAGAGGTAGTGAATGCAACAAATTCAAGTGAAGAGAATAATAGTAATAAGGGAAGAGAAGAAGAAGGTGGTGGTGGCGGCGGCGACGACGGCGGCGATAAGATGAGCTTTGGTGGAAACCGGTGGCCACGGCAAGAAACTTTGGCTCTCTTAAAGATAAGGTCAGATATGGATTCAGTGTTTCGTGATTCAACTCTCAAAGGTCCACTATGGGAAGAAGTTTCAAGGAAATTAGGAGAGATTGGATACAAGAGAAGTGCAAAGAAATGCAAAGAAAAATTTGAGAATGTTTATAAGTATCACAAGAGAACCAAAGAAGGTAGAACTGGAAAATCTGAAGGAAAAACCTACAAGTTCTTTGATCAATTACAAGCACTTGAGAATCACAATCAATTCAATACACACCCTCCTCCAAAATCATCACAACCTCTTTTGCCAGCAAACCCTACTCTAGTCTATTCTTCGATATTACCGTCAACAACCGTAACTGCAGCCACAACCAACAACATAAGTAGTACTACTTTTGCACCACATTCCTTTCCCAATAACAACAGCATGAACCTTTTCTCATCACCATCGTCGTCACCAACATCTCCATCATCCTCCACAGCTTCAGATGAAGGGTTGGAAGAGAGGTACAAGAAGAAGAGGAAATGGAAGGACTACTTCAGGAAGCTGACTAGGCAAGTCCTTGCAAAGCAAGAGGAGATGCAAAATAGGTTCTTGGAAGCCATAGATAGACGAGAAAGAGAAAGAGTAGCACAAGAAGAAGCTTGGAGGTTGCAAGAGATGTCAAGAATCGCCAATGAACACGACGTACTTGTGCAAGAGAGGTCAACAGCTGCGGCCAAAGATGCAGCTGTTATCGCTCTCTTGCACAAGTTATCCGGCCACGAAACACAATCACCACAGACACAGATACAGATACAGAAACAAGAGACAATTAAGGCAAAGAATAGTAGTAGTAGTGAAATAGTTGAAAGAATGAGTTGTTCTTCGTCTTCAAGGTGGCCAAAGGGTGAAGTTCATGCATTGATAAGGCTAAGAACAAGTCTTGATTCGAAGTACATGGAGAATGGACCAAAAGCTCCATTATGGGAGGATATATCAGGTGGAATGCAGAGATTAGGTTACAACCGAAGTGCGAAGAGATGCAAAGAGAAATGGGAGAATATAAACAAGTACTTCAAGAAAGTGAAGGAGAGTAACAAGCAAAGGCGTGAAGATAGCAAGACTTGTCCCTATTTTCATGAGCTTGAAGCTCTTTACAAAGACAAGATTAGCAACAACAACAACAACAACACCTTTGGAAGTTTCCAGAATAATATGGAGCCTTTGATGGTTCAGCCTGAGCAACAATGGAGGCCACCACCTGAACCCAACAAGGACAACAATAATGCATCAAATGAAGATGAAGAAGAAGAGTATGATGATGATGGTGTTGAAGAAGAAGAAGAAGAAGAAGAGGGAGATAGTGTTGGAGAAGAAGAAGAAGGATTGAACCGTTATCAGATTGTGACAAATAAAGTTTCATCAGTGGACACAGTTGAATAA 1689 0.4216 MQLEDSSILSLINNKPVMAVTAVAAPEEDGVKGGGEVVVGMEEEEEEVVNATNSSEENNSNKGREEEGGGGGGDDGGDKMSFGGNRWPRQETLALLKIRSDMDSVFRDSTLKGPLWEEVSRKLGEIGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGKTYKFFDQLQALENHNQFNTHPPPKSSQPLLPANPTLVYSSILPSTTVTAATTNNISSTTFAPHSFPNNNSMNLFSSPSSSPTSPSSSTASDEGLEERYKKKRKWKDYFRKLTRQVLAKQEEMQNRFLEAIDRRERERVAQEEAWRLQEMSRIANEHDVLVQERSTAAAKDAAVIALLHKLSGHETQSPQTQIQIQKQETIKAKNSSSSEIVERMSCSSSSRWPKGEVHALIRLRTSLDSKYMENGPKAPLWEDISGGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELEALYKDKISNNNNNNTFGSFQNNMEPLMVQPEQQWRPPPEPNKDNNNASNEDEEEEYDDDGVEEEEEEEEGDSVGEEEEGLNRYQIVTNKVSSVDTVE* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3240 562 MobiDBLite consensus disorder prediction 219 251 - -
Ahy5g3240 562 ProSiteProfiles Myb-like domain profile. 79 143 IPR001005 -
Ahy5g3240 562 Coils Coil 41 61 - -
Ahy5g3240 562 MobiDBLite consensus disorder prediction 219 256 - -
Ahy5g3240 562 Pfam Myb/SANT-like DNA-binding domain 85 171 IPR044822 -
Ahy5g3240 562 Pfam Myb/SANT-like DNA-binding domain 380 467 IPR044822 -
Ahy5g3240 562 Gene3D - 87 148 - -
Ahy5g3240 562 Gene3D - 382 443 - -
Ahy5g3240 562 CDD GT1 85 150 - -
Ahy5g3240 562 CDD GT1 380 445 - -
Ahy5g3240 562 PANTHER - 41 550 - -
Ahy5g3240 562 MobiDBLite consensus disorder prediction 495 562 - -
Ahy5g3240 562 Coils Coil 514 534 - -
Ahy5g3240 562 SMART sant 378 440 IPR001005 -
Ahy5g3240 562 SMART sant 83 145 IPR001005 -
Ahy5g3240 562 MobiDBLite consensus disorder prediction 26 86 - -
Ahy5g3240 562 MobiDBLite consensus disorder prediction 59 73 - -
Ahy5g3240 562 MobiDBLite consensus disorder prediction 513 540 - -
Ahy5g3240 562 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 41 550 - -
Ahy5g3240 562 ProSiteProfiles Myb-like domain profile. 380 438 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3240 Ahy-Chr5 114404011 114406920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3240 77 498 Trihelix Transcription Factor Family AT1G76890 50.932 3.71e-140 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ahy5g3240 Myb_DNA-bind_4 4.30E-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3240 - - ahf:112802983 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3659 15 159418942 159421656 Ahy5g3240 5 114404011 114406920 hybridization
Ahy5g3240 5 114404011 114406920 Ahy9g2784 9 116877893 116881114 PCT
Ahy9g2784 9 116877893 116881114 Ahy5g3240 5 114404011 114406920 PCT