Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3140 ATGGCTCCGAAGGCACCGAGTACGGGTCTTTTCGTTGGAATGAACAAGGGGCATATCGTCACCAAGAAGGAGCTGCCTCCCCGCCCCAGAGATCGCAAAGGAAAAACAAGCAAGAGGGTGCACTTTGTGAGGAATCTCATTCGCGAGGTTGCTGGTTTTGCGCCGTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGAAAGGATAAGAGGGCATTGAAGGTTGCCAAGAGGAAGCTCGGTACCCATAAACGTGCCAAGAGGAAGAGAGAGGAGATGTCCAATGTCCTCAGAAAGATGAGGGCTGGTGGAGGCGGTGACAAGAAGAAGTAA 333 0.5105 MAPKAPSTGLFVGMNKGHIVTKKELPPRPRDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRAGGGGDKKK* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3140 110 PANTHER 60S RIBOSOMAL PROTEIN L36-1-RELATED 1 110 - -
Ahy5g3140 110 MobiDBLite consensus disorder prediction 87 110 - -
Ahy5g3140 110 Gene3D 60S ribosomal protein L36 2 105 IPR038097 -
Ahy5g3140 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Ahy5g3140 110 MobiDBLite consensus disorder prediction 1 38 - -
Ahy5g3140 110 MobiDBLite consensus disorder prediction 79 110 - -
Ahy5g3140 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 IPR000509 GO:0003735|GO:0005840|GO:0006412
Ahy5g3140 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3140 Ahy-Chr5 113242925 113244472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3140 8 110 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 84.466 3.13e-58 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3140 K02920 - gmx:100785591 212.231