Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3138 ATGCCAGACTCCTGTGAAGAAAAATCTGAACTTCCTTCCAAGTCAAAGCCACAAGAAGAACATGGTTTTCCCATGGATTTTGATATATACCTTGAAAGTTCATCATGGCCCATGGATCACACCCCTTCTGCTTCCAACCCCATGTCTCCTTTCATCATAACAACCTCCTCTGAACAACCTTTTTCTCCTCTCTGGGCTTTTTCTGATGTTGAAGATGATCACAGGCATGTCAGGGTTGTTGCAGGTGATAATACAAATACAAATACAGCAATTGAAACTGAAAATCCGGTTGAAAATGATGACAACAAAAAAATAGTGTCACCCCACTTTGTGCCTCTTCCACCTATTAAAATTCCAGATGGTTATTGTCTAATTAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAACAGTTGACTGAACAGAATTTTCTGGCTCAGGTTTGGGCACCTGTGAGGAATGGCAACCGCTATGCACTCACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTACATCAGTACAGAACAGTTTCCCTGATGTATATGTTTCCTGTTGATGGGGAGAATGATGAAATCTTGGGACTTCCAGGTCGAGTTTTTCAGCAGAAATTGCCAGAATGGACTCCCAATGTTCAGTATTATACAAGTAGAGAGTACTCTCGGAGAAACCATGCACAACATTACAATGTCCGCGGAACGTTAGCTTTGCCTGTGTTTGAATCACCAGGGCAGTCATGTGTTGGTGTATTGGAGCTGATAATGACTTCAGAGAAGGTGAATTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCCCTTGAGGCAGTGAATTTGAGGAGTTCAGAAATTCTGGAACATCCATTTGCTCAGATTTGCAACGAAGGTCGCCAGAATGCGTTAGCAGAGATTTTGGAGATATTGACAGTGGTATGTGAAACTCATAATTTACCTCTTGCACAAACATGGGTTCCCTGTAGGCATCGGAGTGTTTTGGCAAATGGCGGCGGTCTTAAGAAAAGCTGTTCTAGTTTTGATGGCCACTGCATGGGGCGAGTTTGCATGTCTGCCTCCGATGTAGCATTCTATGTCATTGATGCTCATACATGGGGTTTCCACGATGCTTGCGCCGAGCATCACTTACAACAAGGTCAAGGTGTTGCTGGCAGGGCATTTTTATCCCATAACATGAGCTTCTGTGGAAACATAACTCAATTCTGCAAAACTGATTATCCTCTAGTTCATTATGCTCTCATGTTTGGGTTAACCAGCTGTTTCGCAATCTGTTTACAAAGTTCTCATACCGGAAGTGATGATTATGTGTTGGAGTTTTTTCTGCCACCTAGCGTCACAAACTTTTATGAACAAAAGGATTTGTTGGGATCTATATTGGCAACAATGAAGCAGAATTTCCAGAGTCTTAAGGTTGCTGCCGGTGTGGAACTCGAGGAGGGTTGTACAATTGAAGTTGTAGAACCAATAAATGAAAGAATTCATTTGAGCCTTGAATCTGTTCCAGTTGCTCAATCTGCTAAATCACCACCACCTACGCTCAACGCCTCGCTAAATAAGGATGATGGAGTGCCACAAGGTCCGCTAGAACAGCAAATGCCGGCATGGTTGGAAGATATAAATGATGGAGGGAATCTTGGTGATAATGCAGGTGGAAGCATGAATCCGATGACTTCCTTAGATGCTAAAATCAAGAAGAAACCCTCTGAAAGAAAACGTGGAAAAGCCGAGAAAATGATTAGTCTTGAAGTTTTGCAACGTTACTTTAGTGGAAGTCTGAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCGACGACTATGAAGCGTATCTGTAGGCAGCATGGAATATCTCGTTGGCCGTCAAGAAAGATCAATAAGGTTAACCGTTCCTTGTCGAAGCTCAAGTGTGTCATTGAATCAGTCCGAGGTGCAGAAGGAGCATTTGCTTTGAATTCTGTAAATAAAGATCCACTTCCCATTGCTGCCGGTTCCTTTACCGAGCCTTGTACTTCAAAAATGTTCAACCGGAATGCCTCGTTGAGCATCCAGCCATCCAAGACTCAGATGAATGAAAATGATTTGGATACTTCGAGAGTATCAGAGACAAACCGACAGGTGAGGATGCAAGATCAGTTGCTTGAAGGGGAACAGAGTCCTGAGAAGGTGATCCATGAAGAAGGTTGGTCTACTCAAGAAGTTGGCACTAAAGATCCAGAGAAGTTTAGAAATCTTAGTGGTTCAAGTGAGGATAGTGCAAATCCCCATTCTCACGATTCATGTCATGGTAGTCCCCCAAATGAAATTTCACCTGCAAATATATTCAGACCATTCAATAAAGAGAAATCTGTTCCGTTAAGAGTTTCGGCAGAGTCAACAATGCAGCCAACTAATGCACTGAATTATGCAAATGCATATACTGCGCTTAACGTCGAGAGGACAGAACCTCAAGAACCATTTGGCAGAATGCTACTTGAGGGTGTTGGTAGTTCTAAAGACTTGAGAAATTTATGCCCTTTGGAGGATCAAGCTTTAGAAGCTTGTGGGGTTAATCCACCATGTCATGACTTGGCTCCCAAGCAATGCATGATGGATACTACCCTTAATAGCAACAACACTATGATACCTTTTGCACCTAAGAAAGAGACGAAGAGTGTGACGATTAAGGCAACATATAAAGAAGATATCATAAGGTTTAGGGTGTCTTTGAACTGTGGCATTGTTGAACTGCAGGAAGAAATTTCAAAGAGATTGAAACTAGAAATTGGAGCATTTGATATAAAGTATCTGGACGATGATAATGAATGGGTTTTGATATCATGTGATGCAGATCTTCAGGAGTGCATGGATGTTTTAACTTCATCAGGAAGCAACATGATAAGGCTTGTGGTGCATGACACGGTTTCCATTCTTGGAAGCTCTTGTGAGAGCTCTGGGAACTGA 2961 0.4238 MPDSCEEKSELPSKSKPQEEHGFPMDFDIYLESSSWPMDHTPSASNPMSPFIITTSSEQPFSPLWAFSDVEDDHRHVRVVAGDNTNTNTAIETENPVENDDNKKIVSPHFVPLPPIKIPDGYCLIKERMTQALRHFKQLTEQNFLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLMYMFPVDGENDEILGLPGRVFQQKLPEWTPNVQYYTSREYSRRNHAQHYNVRGTLALPVFESPGQSCVGVLELIMTSEKVNYAPEVDKVCKALEAVNLRSSEILEHPFAQICNEGRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLANGGGLKKSCSSFDGHCMGRVCMSASDVAFYVIDAHTWGFHDACAEHHLQQGQGVAGRAFLSHNMSFCGNITQFCKTDYPLVHYALMFGLTSCFAICLQSSHTGSDDYVLEFFLPPSVTNFYEQKDLLGSILATMKQNFQSLKVAAGVELEEGCTIEVVEPINERIHLSLESVPVAQSAKSPPPTLNASLNKDDGVPQGPLEQQMPAWLEDINDGGNLGDNAGGSMNPMTSLDAKIKKKPSERKRGKAEKMISLEVLQRYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKCVIESVRGAEGAFALNSVNKDPLPIAAGSFTEPCTSKMFNRNASLSIQPSKTQMNENDLDTSRVSETNRQVRMQDQLLEGEQSPEKVIHEEGWSTQEVGTKDPEKFRNLSGSSEDSANPHSHDSCHGSPPNEISPANIFRPFNKEKSVPLRVSAESTMQPTNALNYANAYTALNVERTEPQEPFGRMLLEGVGSSKDLRNLCPLEDQALEACGVNPPCHDLAPKQCMMDTTLNSNNTMIPFAPKKETKSVTIKATYKEDIIRFRVSLNCGIVELQEEISKRLKLEIGAFDIKYLDDDNEWVLISCDADLQECMDVLTSSGSNMIRLVVHDTVSILGSSCESSGN* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3138 986 MobiDBLite consensus disorder prediction 687 779 - -
Ahy5g3138 986 Pfam PB1 domain 892 972 IPR000270 GO:0005515
Ahy5g3138 986 MobiDBLite consensus disorder prediction 752 773 - -
Ahy5g3138 986 ProSiteProfiles RWP-RK domain profile. 573 654 IPR003035 -
Ahy5g3138 986 SMART PB1_new 891 973 IPR000270 GO:0005515
Ahy5g3138 986 SUPERFAMILY CAD & PB1 domains 889 976 - -
Ahy5g3138 986 Gene3D - 887 972 - -
Ahy5g3138 986 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 985 - -
Ahy5g3138 986 Pfam RWP-RK domain 587 634 IPR003035 -
Ahy5g3138 986 MobiDBLite consensus disorder prediction 1 24 - -
Ahy5g3138 986 CDD PB1_NLP 892 972 IPR034891 -
Ahy5g3138 986 MobiDBLite consensus disorder prediction 687 719 - -
Ahy5g3138 986 PANTHER PROTEIN NLP8 3 985 IPR045012 GO:0003700
Ahy5g3138 986 MobiDBLite consensus disorder prediction 724 751 - -
Ahy5g3138 986 ProSiteProfiles PB1 domain profile. 891 973 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3138 Ahy-Chr5 113225907 113230420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3138 853 984 NLP Transcription Factor Family AT1G64530 45.098 2.29e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ahy5g3138 PB1 4.30E-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3138 - - gmx:100780901 1389.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3547 15 158289205 158293653 Ahy5g3138 5 113225907 113230420 hybridization
Ahy5g3138 5 113225907 113230420 Ahy19g3567 19 158336472 158340544 PCT
Ahy5g3138 5 113225907 113230420 Ahy9g2060 9 109144432 109148504 PCT
Ahy19g3567 19 158336472 158340544 Ahy5g3138 5 113225907 113230420 PCT
Ahy9g2060 9 109144432 109148504 Ahy5g3138 5 113225907 113230420 PCT