Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3094 ATGAATTTCCTCAGGTACTGCCACGTCATCACCACCATCTTCCTTCTATCAGTACCCAACATTACTGCTCAATTGGCGGCTCCGTCAGCTCACCGACCAGTAGTCACCCAAAACAACGACGGAAACCCTTCGATTGCGATTGTTCTCGTCGTTCTCATCTTCGCATTCTTCATGACTGGCTTCTGCGCCGTCTACATTCGCCACTGCAATGAAAGCTACGTCGTTCAGGGAGCTGCCGCTGCCAACGCCGCCACTGCTCCACGTGGTGTCGATCCGGAGGTGCTCTCCACGTTCCCAATTACGGTTTATTCCACCGTGAAGCACCTCAAAACGGGTCACAGTGCGTCGCTTCAGTGCGCTGTGTGCTTGAGCGAGTTCAAGGACATGGACAAGCTCAGACTTTTGCCCAAGTGCAGTCACGTGTTTCACCCCGAGTGCATCGACGCGTGGCTCGCCTCGCACGTGACTTGTCCTGTCTGCAGGGCCAAGATGAAGTCGGAAAACATGGAGTTCAAGGTTGAGATTCAGGAGTTAGAGGGAACTGCCAACCATGTGTTCGATGAAATGTCTGGGAGAATGGGTGAGGTTTCTTGTGATGGGAACGAAGGTGGGGTTGGTGAGGGAGTTGATGGGGTTGTTGGGAAGTGTAATGGGACCTCAAAAGTGAGAGCTTTTGGGTTGTTGGTGAGGTCGCACTCTACGGGTCACTCTCTTGTGGAACCGGGGAAGAGCTTGGAGAGGTTCACTTTGAGGTTGCCTGAGGAATTGAGGAAGCAGATTCTGGAAGCCAATCATAAGTGTAGTGGTGGTAGTGGTGGGATGAAGCGTTCTGCAAGCTACGACGTGGTTTTGCAGAGTGAAGTTGGTGAAGGTAGTAGTAGTAATAAGGGGAGTAAGAATAGCAGGTGGGTGCTGTCTATGACACCTCCGTTTGTTTCTCGCGGTTGGGGTCATTTTAGTACTTCTTCTGGTTTGGCACCGCCGAATGAGTGCTCAACATGCTCTGGGATTCCTAGGCTTTGGGGTTCTTCAGCGGCAAGAGAAGAGAAAGTATGTGAAGGGAGAGAGGGTTTGCAACTGGTGTGA 1086 0.5184 MNFLRYCHVITTIFLLSVPNITAQLAAPSAHRPVVTQNNDGNPSIAIVLVVLIFAFFMTGFCAVYIRHCNESYVVQGAAAANAATAPRGVDPEVLSTFPITVYSTVKHLKTGHSASLQCAVCLSEFKDMDKLRLLPKCSHVFHPECIDAWLASHVTCPVCRAKMKSENMEFKVEIQELEGTANHVFDEMSGRMGEVSCDGNEGGVGEGVDGVVGKCNGTSKVRAFGLLVRSHSTGHSLVEPGKSLERFTLRLPEELRKQILEANHKCSGGSGGMKRSASYDVVLQSEVGEGSSSNKGSKNSRWVLSMTPPFVSRGWGHFSTSSGLAPPNECSTCSGIPRLWGSSAAREEKVCEGREGLQLV* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3094 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 167 IPR013083 -
Ahy5g3094 361 SUPERFAMILY RING/U-box 112 165 - -
Ahy5g3094 361 CDD RING-H2_EL5_like 118 161 - -
Ahy5g3094 361 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Ahy5g3094 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 14 280 - -
Ahy5g3094 361 Coils Coil 161 181 - -
Ahy5g3094 361 Pfam Ring finger domain 118 161 IPR001841 -
Ahy5g3094 361 PANTHER RING FINGER DOMAIN-CONTAINING 14 280 - -
Ahy5g3094 361 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3094 Ahy-Chr5 112616998 112619024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3094 2 314 Rapid Response to Elicitors AT3G05200 36.070 1.11e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3094 K10664 - gmx:102665105 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3506 15 157817814 157819956 Ahy5g3094 5 112616998 112619024 hybridization