Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3088 ATGCCTGGTTTCTCAGCTTTTGAGTTACCTCTTTCTTCTCCTCTCATTTCAATGTCAAAGCAAAATTTCCCTACCTTGTCTTTCTCCAATCAGAGGGAAATGATGGAGGGCCACAGTGAACTGGGTCTTATTGGAGATCATTTTGACGGCGGTTTGCTGGGCAGGATTAAGGACGATGGGTATGAAAGCCGGTCCGGTAGCGACAATTTCGAAGGTGCATCTGGTGATGATCAAGAAGCTGCTAATGATCAGCCAAAGAGGAAAAAGAAATACCACAGGCACACTCCTCACCAAACTCAGGAGCTTGAAGCTTTCTTCAAGGATTGTAATCATCCTGATGAGAAGCAAAGGGCAGATCTTAGTAGAAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAAAATCGACGAACCCAAATGAAGACGCAAATCGAGCGCCATGAGAACATGATTCTTAAGCAGGAAAATGAGAGGCTCCGAGCTGAGAACAGTGTGATGAGGGAAGCTATGGCAAACCCAATGTGCAACAACTGTGGTGGAGCAGCCATTCCAGGGCAAATTTCATTTGATGAGCATCAGATTAGAATTGAAAATGCTCGGTTGAAGGATGAATTGAACCGTATATGTGCCTTGGCGAACAAGTTTCTTGGCAGGCCAATCTCATCATTGGCCAGCCCCATGTCCTTGCCTGCCTCGAATTCTGGTCTAGAGCTCGGTATTGGCAGGAATGGTTTTAGTGGTGGTTCAAGCGGTCTTGGCATGTCAATGGGGCTTGATTTTGGGGACTTTTCAGGGGGCACTCTGCCTGCGATTTCTGGGATTAGATCACCGATGGGGTTGATGGGAAATGAAATCCATGCGGAGAGATCTATGCTATTGGAACTTGCATTAGTGGCTATGGACGAATTACTCAAGATGGCTCAGGCAGATAGCCCACTTTGGATTAAGATGGATGGCGGGAAGGAAATTCTGAACCAAGAAGAGTATGCAAGAATGTCTTCTTTTATTTCTCCAACATCTCCGGGATATGTAACTGAAGCTTCGAGAGAAACCGGTGTAGTAATAATCAACAGTTCAGCCCTCGTTGAAACAATGATGGACCCGGAACGATGGTCGGAGATGTTTCCTTCTATGGTTTCTAGAGCTGTAACCCTTGATGTTATAGCTAGTGGCATGGGTGGATCAAGAAATGGATCTTTGCAAGTGATGCAAGCGGAGATTCAATTGCTTTCGCCACTCGTTCCTGTTCGTCAATTGAGCTTCCTCAGGTTTTGCAAGCAGCATGCAGAAGGGTTGTGGGCAGTGGTAGATGCTTCAATTGATGCTGGTCGCAATTTTAAGAGGCTTCCATCAGGCTTTCTTGTGCAAGATACACCCAATGGTTTCTCAAAGATTACTTGGGTTGAGCATTCCCAATATGATGAGAGTCTCATTCACCAACTCTATCGGCCGTTGATTGCTTCCGGCCTCGGCTTCGGCGCTCCTAGATGGATTGCCACTCTCCAAAGGCAGTGTGAATGTTTGGCAATACACATGTCCTCTTCAATCCCAAGCGAGGACGCCACAGCCATAAGCCCAGCTGGTAGGAGAAGCATGCTGAAGCTTGCGCAACGCATGGCTAATAACTTCTTTTCTGGGATTTGTCTGTCTTCATCGCAAAAATGGGACACACACCATCTCGGCAATGTTGGTGATGAGATCAAAGTTATGACCCGGAAAAACACTGATGTCCCCGGTGAGCCCCCTAGCATCGTCTTGTGTGCGGCCACTTCAGTCTGGATGCCGGTGTCGCGGCAGAGGGTGTTTGACTTCTTGCGTGACGAACGGATGAGAGGGGAGTGGGTCATCTTATCCGGCATTGGACAAATGAAGGAGATGCTTCGCATTTCCAAAGGACAAGTTGATGGAAATTCCTTATCGGTCCTTCGTGCTAATGCTAATAATGGCGGCGAGAGCAGCAACAACACGCTGTTTTTGCAGGAGACATGGAACGATACCTCGTGCTCGGCGTTGCTGTATTCGCCGGTGGAGGTGGAATCGTTGAAAGTGGTAATGAGTGGAGGAGATTCCACATATGTTGCACTCATCCCTTCAGGCTTTACCATTCATCCGGATGGTCATTCCGGCACACAAGATGTAGATGACGGTGGCAGTTCCGGATGCCTGCTCACAGTTGGGCTACAGATATTGCTGAACAGCCTCCCCACGGCCAAGCTCACGGCGGAGTCAGTCGAAACCGTGAACGACCTCATCACAGGCACCATTCAGAAGATCAAAGCTTCACTAGGAGTTGCGTAG 2304 0.4805 MPGFSAFELPLSSPLISMSKQNFPTLSFSNQREMMEGHSELGLIGDHFDGGLLGRIKDDGYESRSGSDNFEGASGDDQEAANDQPKRKKKYHRHTPHQTQELEAFFKDCNHPDEKQRADLSRRLGLENKQVKFWFQNRRTQMKTQIERHENMILKQENERLRAENSVMREAMANPMCNNCGGAAIPGQISFDEHQIRIENARLKDELNRICALANKFLGRPISSLASPMSLPASNSGLELGIGRNGFSGGSSGLGMSMGLDFGDFSGGTLPAISGIRSPMGLMGNEIHAERSMLLELALVAMDELLKMAQADSPLWIKMDGGKEILNQEEYARMSSFISPTSPGYVTEASRETGVVIINSSALVETMMDPERWSEMFPSMVSRAVTLDVIASGMGGSRNGSLQVMQAEIQLLSPLVPVRQLSFLRFCKQHAEGLWAVVDASIDAGRNFKRLPSGFLVQDTPNGFSKITWVEHSQYDESLIHQLYRPLIASGLGFGAPRWIATLQRQCECLAIHMSSSIPSEDATAISPAGRRSMLKLAQRMANNFFSGICLSSSQKWDTHHLGNVGDEIKVMTRKNTDVPGEPPSIVLCAATSVWMPVSRQRVFDFLRDERMRGEWVILSGIGQMKEMLRISKGQVDGNSLSVLRANANNGGESSNNTLFLQETWNDTSCSALLYSPVEVESLKVVMSGGDSTYVALIPSGFTIHPDGHSGTQDVDDGGSSGCLLTVGLQILLNSLPTAKLTAESVETVNDLITGTIQKIKASLGVA* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3088 767 SUPERFAMILY Homeodomain-like 75 145 IPR009057 -
Ahy5g3088 767 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Ahy5g3088 767 CDD START_ArGLABRA2_like 291 508 - -
Ahy5g3088 767 Pfam START domain 297 509 IPR002913 GO:0008289
Ahy5g3088 767 Coils Coil 139 174 - -
Ahy5g3088 767 SMART HOX_1 87 149 IPR001356 GO:0003677
Ahy5g3088 767 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Ahy5g3088 767 Gene3D - 74 161 - -
Ahy5g3088 767 MobiDBLite consensus disorder prediction 59 97 - -
Ahy5g3088 767 CDD homeodomain 88 145 IPR001356 GO:0003677
Ahy5g3088 767 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 30 765 - -
Ahy5g3088 767 SUPERFAMILY Bet v1-like 528 751 - -
Ahy5g3088 767 ProSiteProfiles START domain profile. 287 512 IPR002913 GO:0008289
Ahy5g3088 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 765 IPR042160 -
Ahy5g3088 767 SUPERFAMILY Bet v1-like 290 509 - -
Ahy5g3088 767 Pfam Homeodomain 88 143 IPR001356 GO:0003677
Ahy5g3088 767 SMART START_1 296 509 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3088 Ahy-Chr5 112556628 112561593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3088 57 764 Homeobox Transcription Factor Family AT3G61150 56.849 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy5g3088 START 1.00E-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3088 K09338 - gmx:100785102 1042.72