Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3052 ATGTTTACCTTCACTACTACTCACTCTAACTCCACCACATGGCCGGCTGTTAACTCTGAATTCTCCACTTCCTATGACACTTCCTCGCCCGTTTCTGACGCAAGTACCAGTGGAGGCGGCGTTCATGGTTTCGTGTTTTCTGACGAGGAGGTGCTGCTGGCGGCAACCCATCCCAAGAAGCGAGCGGGGAGGAAGAAGTTCAAGGAGACACGTCACCCTGTGTATAGGGGTGTGAGGAGGAGGAACTCTGATAAGTGGGTTTGTGAAGTTAGGGAGCCAAACAAGAAGTCTAGGATTTGGTTGGGGACATTTCCCACGGCTGAGATGGCGGCGCGTGCCCATGACGTGGCAGCAATCGCCTTGAGAGGCCGCCATGCCTGCCTTAACTTTGCTGACTCCGCGTGGCGGCTACAGTTGCCTGCCACGTCAGATGCCAAGGCCATCCAGAAGGCTGCAGCAGAGGCTGCCGAAGCCTTCCGACCTAGGATGGCCTTGGAGACTAATGACAATTCCAAAGAAAGTATCGATGATGAGGTGGCAGTGACGGCGGCCGTGCCAAAAGAAGAGGAGCAAGGAGTGTTTTGTATGGAGGAGGAAGAGGCCGAGACGGTGTTGGGATTGCCGGAATCATTGAGAAATATGGTGCTCATGTCCCCAACACATTGCATGGGGTATGAGTACGGATATGCTGACGTGGACGTTGGTGATACTGAGGTGTCATTATGGAGTTTTCCAATTTAG 741 0.5331 MFTFTTTHSNSTTWPAVNSEFSTSYDTSSPVSDASTSGGGVHGFVFSDEEVLLAATHPKKRAGRKKFKETRHPVYRGVRRRNSDKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGRHACLNFADSAWRLQLPATSDAKAIQKAAAEAAEAFRPRMALETNDNSKESIDDEVAVTAAVPKEEEQGVFCMEEEEAETVLGLPESLRNMVLMSPTHCMGYEYGYADVDVGDTEVSLWSFPI* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3052 246 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Ahy5g3052 246 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Ahy5g3052 246 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Ahy5g3052 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 22 245 IPR045277 GO:0003700
Ahy5g3052 246 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Ahy5g3052 246 SUPERFAMILY DNA-binding domain 74 133 IPR016177 GO:0003677
Ahy5g3052 246 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Ahy5g3052 246 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Ahy5g3052 246 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 22 245 - -
Ahy5g3052 246 CDD AP2 75 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3052 Ahy-Chr5 112086318 112087894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3052 12 244 AP2-EREBP Transcription Factor Family AT4G25470 53.191 9.76e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy5g3052 AP2 1.50E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3052 - K09286 adu:107491210 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3454 15 157118168 157119588 Ahy5g3052 5 112086318 112087894 hybridization
Ahy5g3052 5 112086318 112087894 Ahy9g2103 9 109759468 109760774 PCT
Ahy9g2103 9 109759468 109760774 Ahy5g3052 5 112086318 112087894 PCT