Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3036 ATGGTGAGAGGAAAGATTGAGATGAAACGGATAGAGAATGCAACAAGCCGTCAAGTAACGTTTTCAAAGAGGAGGAGTGGGCTTCTAAAGAAAGCACATGAGCTTTCTGTTCTTTGTGATGCACAAATTGCTCTTATAATCTTTTCACAAAGTGGGAGGCTCTTTGAATACTCAAGTACTTCAGACATGGATCAACTTTTGGAACGCTACCGTCAATATGTAGCAGATGATGGTCGTATCAATAATATTGGAGAATTCCAGCAATTGGAATTTGATCCCCAAGCTTGGCTAAGAAGATTGAACTTCTTGAGCTTTCTCAAAGGAAGCTAA 330 0.397 MVRGKIEMKRIENATSRQVTFSKRRSGLLKKAHELSVLCDAQIALIIFSQSGRLFEYSSTSDMDQLLERYRQYVADDGRINNIGEFQQLEFDPQAWLRRLNFLSFLKGS* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3036 109 PANTHER MADS BOX PROTEIN 1 79 - -
Ahy5g3036 109 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Ahy5g3036 109 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy5g3036 109 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Ahy5g3036 109 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN FUL-L 1 79 - -
Ahy5g3036 109 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Ahy5g3036 109 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy5g3036 109 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy5g3036 109 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy5g3036 109 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy5g3036 109 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy5g3036 109 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3036 Ahy-Chr5 111918416 111923517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3036 1 107 MADS-box Gene Family AT5G62165 61.468 1.58e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy5g3036 SRF-TF 1.10E-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3036 - - ath:AT5G62165 124.405