Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3027 ATGGGAAAGGGTAAGGAGAAGGAGCTTCATCAGGTAGCTATTTGGGGACTAGAAAATAATAATAATTATAACAATAATAATGAAGAAAACAAGAAGTGGATGCATAGAGAGACAGAAAGACAAAGAAGGCAAGAGATGGGGAAGCTTTGTGCTACTCTTAGATCTCTTCTACCTTTAGAATATATTAAGGGAAAGAGGTCAACTTCTGATCACATGTATGAGGCTGTGAATTACATAAACCAGCTTCAAAATAAGGTGAAGAAGTTGCAAGCTAAGAGGGATGAATTAAAGAAGCATTTTTCTGATCTGAATAATAATGCAATTCATGATGATGATGATGAAGATGAAAGTATTTTACATCTTCCACCCTATGTTGTTGTTCATCCTTTGCAAGGAGTAGGTGTTGAGATTATTTGCAGTTACAGCTTCAAGAAATGTTTGTGTCCCTTGTCAAGATTGCTACACATTCTTATTGGTGAAGGGCTTAACATAATCAACACTATTTCAACCAAAAAAAATGGGAGATTCATACACACTATCCAATCAGAGGATCCAAATATTAGTAGTAGTGCTGATTACTCTGAGCTGCAAAGAAAGCTTACAGAAGCAATATCATCATCTTCAAGTTTGCCAGAAACTTTGATTAGACCTGATGAAAGTTGCTTATTATATCTTGATTCTTGA 684 0.3523 MGKGKEKELHQVAIWGLENNNNYNNNNEENKKWMHRETERQRRQEMGKLCATLRSLLPLEYIKGKRSTSDHMYEAVNYINQLQNKVKKLQAKRDELKKHFSDLNNNAIHDDDDEDESILHLPPYVVVHPLQGVGVEIICSYSFKKCLCPLSRLLHILIGEGLNIINTISTKKNGRFIHTIQSEDPNISSSADYSELQRKLTEAISSSSSLPETLIRPDESCLLYLDS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3027 227 Pfam Helix-loop-helix DNA-binding domain 32 83 IPR011598 GO:0046983
Ahy5g3027 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 29 102 IPR036638 GO:0046983
Ahy5g3027 227 SMART finulus 36 88 IPR011598 GO:0046983
Ahy5g3027 227 CDD bHLH_AtORG2_like 31 98 - -
Ahy5g3027 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 30 82 IPR011598 GO:0046983
Ahy5g3027 227 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 21 212 IPR015660 GO:0003700|GO:0006357
Ahy5g3027 227 Gene3D - 21 109 IPR036638 GO:0046983
Ahy5g3027 227 PANTHER TRANSCRIPTION FACTOR 21 212 - -
Ahy5g3027 227 Coils Coil 72 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3027 Ahy-Chr5 111731706 111733423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3027 24 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.938 5.88e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy5g3027 HLH 2.40E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3027 - - ahf:112751692 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3430 15 156758024 156759622 Ahy5g3027 5 111731706 111733423 hybridization
Ahy5g3027 5 111731706 111733423 Ahy19g3508 19 157784947 157786916 PCT
Ahy5g3027 5 111731706 111733423 Ahy9g2124 9 110000800 110002372 PCT
Ahy19g3508 19 157784947 157786916 Ahy5g3027 5 111731706 111733423 PCT
Ahy9g2124 9 110000800 110002372 Ahy5g3027 5 111731706 111733423 PCT