Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3026 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTGATTCAGTTTTCTAATACCTCCCACCAACACAAAATCTCCCAAGATCTGATCCTTGAAGATTATGCTTCTCTTGATGTCAATGATTCTGATAAAATATTGTTCACAAAAAGCCAATCATCAAATAAACTATTTTATGATGGTGCTGCTGCTGCTGATGAGGATAACAACAACAACAACAACAACAACAACGATTCTAACAACGATGATGATAATAAGAAGAAGAAGATGGTTCATAGAGAGATTGAGAGGCAAAGGAGGAAAGAAATGGCTACCCTTTATTCCTCTCTTAGATCCCTTCTTCCTCTTCAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGTACATGCAAAATAACATCAAGGAACTTGGTGCTAAAAGAGATGAACTGAAGAAGAAGAAGAAGCTCTCAAATTATTACCACCACCATGATAACAATGATAAACCTACATCTAGCACTAACAGATACTTCACTCTCCATGAGAGTGATAATGGTGTTCTCGGAATTGAAATCACCGGTGGCGCCGCCGCCGCCGCCGGAGAAGAAGAAGGTGTCACACTATCAGAGATTCTGGGGCTACTGGTTGAAGAAGAAGGACTTGAAGTTCTTAGTTACCTTTCTAGCAAAGTCAATGGAAGATTGGTACACAGTGTTCAGTGTGAGGTAGTCAATTCCAACAGTGTAGATCTATTTGAGCTGAGAAGGAAACTTGCAAGTTTAATTCAATGA 789 0.3967 MFPLQRGNELVIQFSNTSHQHKISQDLILEDYASLDVNDSDKILFTKSQSSNKLFYDGAAAADEDNNNNNNNNNDSNNDDDNKKKKMVHREIERQRRKEMATLYSSLRSLLPLQFIKGKRSISDHMNEAVNYIKYMQNNIKELGAKRDELKKKKKLSNYYHHHDNNDKPTSSTNRYFTLHESDNGVLGIEITGGAAAAAGEEEGVTLSEILGLLVEEEGLEVLSYLSSKVNGRLVHSVQCEVVNSNSVDLFELRRKLASLIQ* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3026 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 136 IPR011598 GO:0046983
Ahy5g3026 262 CDD bHLH_AtORG2_like 87 149 - -
Ahy5g3026 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 159 IPR036638 GO:0046983
Ahy5g3026 262 MobiDBLite consensus disorder prediction 77 91 - -
Ahy5g3026 262 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 261 - -
Ahy5g3026 262 MobiDBLite consensus disorder prediction 61 91 - -
Ahy5g3026 262 Pfam Helix-loop-helix DNA-binding domain 85 137 IPR011598 GO:0046983
Ahy5g3026 262 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 261 IPR015660 GO:0003700|GO:0006357
Ahy5g3026 262 Gene3D - 75 163 IPR036638 GO:0046983
Ahy5g3026 262 SMART finulus 90 142 IPR011598 GO:0046983
Ahy5g3026 262 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3026 Ahy-Chr5 111699041 111701215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3026 80 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 41.848 2.34e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy5g3026 HLH 2.60E-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3026 - - aip:107644748 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3427 15 156720118 156722013 Ahy5g3026 5 111699041 111701215 hybridization