LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy5g2978	ATGTCAGCCGCGTCGCCTTCACCGGCAGCTTCTGGCGACACTCAACCGCCACAACAACCACCACCATCACCACCTGCTTCGCCTGCACCTGACACTTCAGCTTCGCCACCGCCGCTGTCGCCGACGCCACCACTACCTTCGACTTCAACCACGCCATCTCAGTCCCCGCCACCAACGACCACAACACCATCTTCTCCTCCTCCAACCGCGCCGCCGCCGGTGCAACCGTCACCTACGCCGTCCGAACCACCGCCTCCTGCTTCACCTCCTCTTTCGTCTGGAAACCCGCCTCCAAGAGCTCCTCCACCAACCCCGCCGCAATCAGACCCTCCCCAATCGCCACCACCATCTCCGCCACCGCCATCACTAGCCCCACCGAGAAGCTCTCCACCACCATCGAATCCCCCTCCCACGCCTCCATCAAACCCTCCTAAGAGCACATCTCCGCCGCGACAGTCACCGCCACCGGAGAATTCACCACCCCCTGCTCCTTCTCCTCCAACAACAGCCGCGCCGCCACCACGAGGCTCCCCTCCCCCGCCACGGTCTGCGCCACCACGAGGCTCCCCTCCCCCGCCACGGTCTGCGCCACCACCAAAAACTTCGCCTCCACCTCAACCATCCGTGCCGCCTCCGGCGAATTCCTCACCCCCAAGTCCCGCATCTGTGCCGCCGCCAAGATCATCGCCACCACCGGCATCAACCCCTCCTCCCCAAAATTCATCTCCTCCTTCGACTTCCACGTCTCCCCCAAGATCTGCACCTCCTCCTCCTCCTCCCACAACACCTAGCACTCAACCGGCTCCTTCAAATTTTCCACCTAGGTCATCATCATCCCCACCACCGCCAAATCAGTTGGCGCCGCCTCCGGCATCCATTCTTACTCCACCTGGAAACGGATCACAGACAGAGAATTCAGGTCCTACAGCTGGAGGTGGTAATGGAATTGGTACCGCTGCAATAGTGGCTATCAGTGTAGTGGCGGGAATTCTGCTGTTTGGGATCATTGGAGTTGCAATTTGGTGCACGATAAAGAGGAAAAAGAAAAAGGTGCTGAGCAATGGTGGTTACGTCATGCCAACAACTCCTGCCTCATCTCCTGATTCAGATTCCTCATTCTATAAGACGCATTCTTCAGCTCCTCTTGTACAAAGCGGCTCTGGCAGTGATGTTTTGTATACACCATCTGATCCTGGTGGACTAGGCCACTCAAGGTCGTGGTTTTCGTATGAAGAATTAATCAAGGCCACAAATGGTTTCTCAACTGAAAATCTCTTAGGCGAAGGTGGATTTGGTTCCGTGTATAAAGGATACCTGCCGGATGGGAGAGAGATAGCGGTCAAACAGCTGAAAATTGGTGGTGGTCAGGGAGAGAAAGAATTCAAAGCTGAAGTCGAGATTATTAGTCGCATACATCATCGTCATCTGGTTTCACTGGTTGGATATTGTATTCAAGATACCAGAAGACTGCTTGTCTATGACTATGTCCCCAATAATACCCTTTATTTTCATCTACATGGGGATGGTAGGCTGGTGTTAGAGTGGGCAAACCGTGTTAAAATTGCAGCTGGTGCAGCTCGAGGGATAGCTTATCTCCATGAAGACTGTAATCCTCGGGTTATTCACAGGGATATCAAGTCATCGAACATTCTTTTAGATTACAACTTCGAGGCTAAAGTTTCAGATTTTGGGCTAGCAAAATTAGCCCTAGATGCAAATACACATATAACCACACGAGTCATGGGAACTTTTGGGTACGTAGCCCCTGAATATGCATCCAGTGGCAAATTGACTGAGAAGTCTGATGTATATTCCTTTGGGGTTGTGCTCTTGGAGCTCATTACTGGGCGGAAGCCAGTAGATACATCTCAACCCTTGGGAGATGAGAGTTTAGTTGAATGGGCTCGACCATTATTGAGTCATGTACTTGATAGTGGGGAGTTGGGGATTTTGACGGATCCAAGGCTAGAAAAGAATTATGTTGAAAGTGAAATTTTCTGTATGATAGAAGTTGCTGCATCTTGCGTTCGACACTCAGCTGCAAAGAGGCCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGCTTCTGACCTAACGAATGGATTGCGAGTTGGAGAAAGCGAGGCTTTTAACTCTGCGCAGCTATCGGAAGAGATAAGATTGTTTAGGAGAATGGCATTTGGTGATCAAAATTATAGCACCGATTTCTTTAGCAAGGGTAGTTCAAATACGTGA	2244	0.516	MSAASPSPAASGDTQPPQQPPPSPPASPAPDTSASPPPLSPTPPLPSTSTTPSQSPPPTTTTPSSPPPTAPPPVQPSPTPSEPPPPASPPLSSGNPPPRAPPPTPPQSDPPQSPPPSPPPPSLAPPRSSPPPSNPPPTPPSNPPKSTSPPRQSPPPENSPPPAPSPPTTAAPPPRGSPPPPRSAPPRGSPPPPRSAPPPKTSPPPQPSVPPPANSSPPSPASVPPPRSSPPPASTPPPQNSSPPSTSTSPPRSAPPPPPPTTPSTQPAPSNFPPRSSSSPPPPNQLAPPPASILTPPGNGSQTENSGPTAGGGNGIGTAAIVAISVVAGILLFGIIGVAIWCTIKRKKKKVLSNGGYVMPTTPASSPDSDSSFYKTHSSAPLVQSGSGSDVLYTPSDPGGLGHSRSWFSYEELIKATNGFSTENLLGEGGFGSVYKGYLPDGREIAVKQLKIGGGQGEKEFKAEVEIISRIHHRHLVSLVGYCIQDTRRLLVYDYVPNNTLYFHLHGDGRLVLEWANRVKIAAGAARGIAYLHEDCNPRVIHRDIKSSNILLDYNFEAKVSDFGLAKLALDANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDTSQPLGDESLVEWARPLLSHVLDSGELGILTDPRLEKNYVESEIFCMIEVAASCVRHSAAKRPRMGQVVRAFDSLGASDLTNGLRVGESEAFNSAQLSEEIRLFRRMAFGDQNYSTDFFSKGSSNT*	748

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy5g2978	747	SMART	serkin_6	420	693	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy5g2978	747	SUPERFAMILY	Protein kinase-like (PK-like)	402	691	IPR011009	-
	Ahy5g2978	747	Gene3D	Transferase(Phosphotransferase) domain 1	496	706	-	-
	Ahy5g2978	747	PANTHER	BNACNNG34790D PROTEIN	126	743	-	-
	Ahy5g2978	747	MobiDBLite	consensus disorder prediction	1	311	-	-
	Ahy5g2978	747	Pfam	Protein kinase domain	421	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy5g2978	747	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	540	552	IPR008271	GO:0004672\|GO:0006468
	Ahy5g2978	747	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	126	743	-	-
	Ahy5g2978	747	ProSitePatterns	Protein kinases ATP-binding region signature.	426	448	IPR017441	GO:0005524
	Ahy5g2978	747	ProSiteProfiles	Protein kinase domain profile.	420	696	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy5g2978	747	PRINTS	Proline rich extensin signature	1	22	-	-
	Ahy5g2978	747	PRINTS	Proline rich extensin signature	64	89	-	-
	Ahy5g2978	747	PRINTS	Proline rich extensin signature	22	38	-	-
	Ahy5g2978	747	PRINTS	Proline rich extensin signature	40	57	-	-
	Ahy5g2978	747	Gene3D	Phosphorylase Kinase; domain 1	400	495	-	-
	Ahy5g2978	747	MobiDBLite	consensus disorder prediction	296	311	-	-
	Ahy5g2978	747	CDD	STKc_IRAK	426	696	-	-
	Ahy5g2978	747	MobiDBLite	consensus disorder prediction	13	295	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy5g2978	Ahy-Chr5	110565640	110571394	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy5g2978	232	689	Trihelix Transcription Factor Family	AT1G68690	62.690	0.0	553

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Ahy5g2978		Pkinase	2.40E-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy5g2978	-		-	vun:114173712	751.51