Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2944 ATGGGTCGTGGAAGACTATCAATGGAGCTAATTCAGAAAGAAAAAGCTAGGAAGACAACATTTGTAAAGAGAAAGAATGGATTAATGAAGAAAGTGGACGAGTTCTCCACTCTTTGTGGTGTTGATGTTTGTTTAATTATCTATGGCCCCAACTTTGATGGTCAAAGACCCACCAAACCTGAGACATGGCCCCAAGACATCGACCAGGTACGCCGAATCATTCAAAAGTACCATAACACAACAAGTGATAGACCTCCTAGGATCTATGATATTGAAAAGTATTATAGAGATAGGGTTAAGAAAGTTGAAGGTGAGATTTCTAAGGTGCACAAGGAGAAGGAGAAGCTTAAGCCCAAGATCACATATCCTACTTGGGATACCTCATTCAATGATCTTAGGGAAGACCAACTGATAATGTTTGCTGGAATGTTGGATTCTAAGATTGTGTCTTGCAATCAAAGAATCAACATGCTAAAGCAAGATCCCAAGGGAAAAGCAATAATGGTAGAATCAAAAGACAATGTTGATGAGAATGTTTTTGCTACTCTTTACTTGGCTTCATCAAACCCTAGTAGCTACCTTAATTTTATGCCAAACAAGTCTCAGCAAGCACAGTTTATTCCTCACCTTCCCATGACACCCATTATTGATTATACCACCCAATTACCATTCTACCCTTCGCAATTAGGGGGAAGTTCATCACAATCTTCCACTCTTCATTTTGACCAAAATAGTATGCAACTTATGGGAAAAAATGGGACTTTGGATTGGGAGCAACCAGTTGGTACTTTTAGCACTCATGATATACAAGGTGATTTTCTAAATTACACTGGAGATGGAAGCAACAACCAGAACTCTTCATCGCCATGCTATTACAATGGGAATATACAATCTGTGCAGCCATATAGTTTTGCTCTACCTCAATATGAAGATGTGCCTCCTGAGTTTCAAGTTAATGGACTCTGA 966 0.3913 MGRGRLSMELIQKEKARKTTFVKRKNGLMKKVDEFSTLCGVDVCLIIYGPNFDGQRPTKPETWPQDIDQVRRIIQKYHNTTSDRPPRIYDIEKYYRDRVKKVEGEISKVHKEKEKLKPKITYPTWDTSFNDLREDQLIMFAGMLDSKIVSCNQRINMLKQDPKGKAIMVESKDNVDENVFATLYLASSNPSSYLNFMPNKSQQAQFIPHLPMTPIIDYTTQLPFYPSQLGGSSSQSSTLHFDQNSMQLMGKNGTLDWEQPVGTFSTHDIQGDFLNYTGDGSNNQNSSSPCYYNGNIQSVQPYSFALPQYEDVPPEFQVNGL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2944 321 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy5g2944 321 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Ahy5g2944 321 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 217 - -
Ahy5g2944 321 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Ahy5g2944 321 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy5g2944 321 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy5g2944 321 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy5g2944 321 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Ahy5g2944 321 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ahy5g2944 321 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Ahy5g2944 321 PANTHER MADS BOX PROTEIN 3 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2944 Ahy-Chr5 109722491 109723456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2944 1 154 Type I MADS-box Gene Family AT5G55690 37.580 1.36e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy5g2944 SRF-TF 6.50E-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2944 - - aip:107640879 620.542