Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2939 ATGAGACCAGAAGGAAATCCATTAGACCTTAACAATTTGCCTGATGACTACAATAGAGATCATGGCAAACAACTCCTCCAAGACACCTTCTCTCCCGGTTGCAGGAAAAAGAAAAGCGGCGGCGGTAAGGATGGAAAAGAGGAGTGTGGGAAGGTGTATGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCCCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACAGAGACGCTGAATCATGCCCGTCAGCTGGTGTTTGCTGCTCATCAACCTCCACCTCACTTAGGATGCTGTCAAGACCCAACAGCCGCAGCTCTCAGATTCCCAAGATACTTCTCTGCGTCATCCACGTCATCAACCGCTTCAGCATCTCATCATCAGCCCTATCTATACGCTTCACCATCCATGCCACCGCCGGTCTCCTTCGCTCCTCCTCCTCACGATTACTACGTGGGCCATGTCCTCAGCACCAACTATGGCGGTGCGGCAGAGTCATCAGCAGGAGCAGGAGGAGGCAGTTACACGTGCATAGGTGCACCGGTGGTGGGACAAACAGGGAAGGAGAGGGAGCAGGAAGGGTCGTTGAATTGGGGAAGATCATCATCAACATCGGGATCACAGCCTCATCATCGTTTGGATCCTCCTTCAGCGATCAATCGGTTTCAAGATGGATTCTAA 696 0.5201 MRPEGNPLDLNNLPDDYNRDHGKQLLQDTFSPGCRKKKSGGGKDGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFAAHQPPPHLGCCQDPTAAALRFPRYFSASSTSSTASASHHQPYLYASPSMPPPVSFAPPPHDYYVGHVLSTNYGGAAESSAGAGGGSYTCIGAPVVGQTGKEREQEGSLNWGRSSSTSGSQPHHRLDPPSAINRFQDGF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2939 231 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Ahy5g2939 231 MobiDBLite consensus disorder prediction 195 216 - -
Ahy5g2939 231 MobiDBLite consensus disorder prediction 1 47 - -
Ahy5g2939 231 Gene3D Classic Zinc Finger 36 97 - -
Ahy5g2939 231 MobiDBLite consensus disorder prediction 190 231 - -
Ahy5g2939 231 PANTHER ZINC FINGER PROTEIN JAGGED 1 200 IPR031113 GO:0007275
Ahy5g2939 231 PANTHER ZINC FINGER PROTEIN JAGGED 1 200 IPR045320 GO:0003700
Ahy5g2939 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Ahy5g2939 231 SUPERFAMILY beta-beta-alpha zinc fingers 51 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2939 Ahy-Chr5 109592648 109594606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2939 4 189 C2H2 Transcription Factor Family AT1G13400 42.857 1.20e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy5g2939 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2939 - - aip:107616790 413.69