Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2842 ATGGGCGGCAACGGCAAGCACCGTTGGAGAATTTCGTTCCATCGTAATTCGAAGCTGGAGCAACAGCAGCCCAAGCATCCCCCTCCGAACGAATTCATATGCCCCATTTCCGGTTCATTAATGTCCGACCCGGTCGTCGTCGCTTCCGGACAAACCTTCGAGCGCCTTTCCATCCAAGTCTGCAACGACCTCTCCTTCTCCCCCACCCTACCCGACGGAACCCGACCCGATTTCTCAACCATTATCCCCAATCTTAACATCAGGACCAGCATCCAAAACTGGTGCCGTAAAACCAAGACCGTACACCCGCCCGCACCGGATTACTCCTCACTCGAGCGCATCGTCAAGGACGCAATGGCCGCTGCAGCTCCTCCGCCCCCTCCGTCGGAGCCTGACCTTAGGGTTTCTGAAAAGGAGCTCCTGAAGGCGGTGCCGGACAATCCGCCGGTGATATTCTCCCACGCCGCCACTGAGTTAGGTCCCCGAGTCAACCACTTCAACTCGGGATCCTCCGAGGAGTCCGTCGTCATCGGTGGCGCGAGTCCGGGTACTCCGCTTCCGTTCACGGTTCGGCCGACGTGCTTCTCGTCGTCCTCCGTCTCCTCCGTTGAAATTACGGAGGTCGAGATCCAAGGGCAAAACCCTAGCGGACCTCTTTCAGAGGAAGAAGAAAAGCTCGTGGCGAAGATGAAGAGCAACGAGGTCTTCGAGCAGGAAGAAGGAGCGATCTCGCTTCGGAACCTCACGCGGAGCAGCGAGGAAGCAAGGGTTTCACTCTGCACGCATCGAGTCCTCTCCCCTCTGCGTTCTCTCGTAGCATCGAGGTACGGCGTCGTGCAGGTCAACGCTGTTGCCTCACTGGTCAACCTTTCGCTTGAGAGACAAAATAAGGTGAGGATCGTGCGGTCAGGATTCGTTCCGTACCTGATCGACGCGCTCAAGGGTGGATCCTCTGAGACGCAGGAACACGCTGCAGGTGCGCTTTTCAGTTTAGCGTTGGATGATGATAATAAGATGGCGATTGGGGTCCTCGGCGCGTTGCAGCCTCTTATGCACGCGCTCCGATCCGAGTCCGAGCGAACTCGGCATGACTCGGCACTCGCGCTGTACCACTTGACCCTGGTTCAGAGCAACCGGGTCAAGCTTGTGAAACTCGGCGTGGTCTCCACCTTGCTGTCGATGGTGAAATCTGGAACCTTAGCGAGTAGGGTTCTGTTGATTCTTTGTAACCTTGCGGTTTGCATGGAAGGGAGGACGGCGATGTTGGATGCTGATGCGGTGGAGTGTTTTGTGGGATTGTTGAGGGAGAACGAGTTGGACTCGGAGTCAACTCGGGAGAACTGTGTGGCGGCGCTGTATGCGCTGAGTCACAGGAGCCTGAGATTCAAGGGGCTGGCTAGGGAGGCGAGGGCCATGGAGGTGCTGAAGGAGGTGGCGGAGGTGACGGGGACCGAGAGGGCGAGGGAGAAGGCCAAGAGGATTTTGCAGATGATGAGGGCTGCCGGTGATGGGGATGATGATGGGTCGGAGCATGATGGGGTTTTGGAATCCGGCGGGTTGACTCGGATGAGGTACCGCGGCAGTGGTGGCAGGAACAATGCCAACACCACGACGTTCTAG 1620 0.5765 MGGNGKHRWRISFHRNSKLEQQQPKHPPPNEFICPISGSLMSDPVVVASGQTFERLSIQVCNDLSFSPTLPDGTRPDFSTIIPNLNIRTSIQNWCRKTKTVHPPAPDYSSLERIVKDAMAAAAPPPPPSEPDLRVSEKELLKAVPDNPPVIFSHAATELGPRVNHFNSGSSEESVVIGGASPGTPLPFTVRPTCFSSSSVSSVEITEVEIQGQNPSGPLSEEEEKLVAKMKSNEVFEQEEGAISLRNLTRSSEEARVSLCTHRVLSPLRSLVASRYGVVQVNAVASLVNLSLERQNKVRIVRSGFVPYLIDALKGGSSETQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVSTLLSMVKSGTLASRVLLILCNLAVCMEGRTAMLDADAVECFVGLLRENELDSESTRENCVAALYALSHRSLRFKGLAREARAMEVLKEVAEVTGTERAREKAKRILQMMRAAGDGDDDGSEHDGVLESGGLTRMRYRGSGGRNNANTTTF* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2842 539 Gene3D - 219 401 IPR011989 -
Ahy5g2842 539 SUPERFAMILY ARM repeat 225 498 IPR016024 -
Ahy5g2842 539 Pfam U-box domain 29 98 IPR003613 GO:0004842|GO:0016567
Ahy5g2842 539 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Ahy5g2842 539 PANTHER U BOX DOMAIN-CONTAINING 1 530 - -
Ahy5g2842 539 SMART arm_5 293 333 IPR000225 GO:0005515
Ahy5g2842 539 SMART arm_5 414 457 IPR000225 GO:0005515
Ahy5g2842 539 SMART arm_5 334 374 IPR000225 GO:0005515
Ahy5g2842 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 103 IPR013083 -
Ahy5g2842 539 Gene3D - 402 505 IPR011989 -
Ahy5g2842 539 CDD RING-Ubox 33 80 - -
Ahy5g2842 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515
Ahy5g2842 539 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 530 - -
Ahy5g2842 539 Pfam Armadillo/beta-catenin-like repeat 334 373 IPR000225 GO:0005515
Ahy5g2842 539 Pfam Armadillo/beta-catenin-like repeat 295 332 IPR000225 GO:0005515
Ahy5g2842 539 SUPERFAMILY RING/U-box 24 102 - -
Ahy5g2842 539 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2842 Ahy-Chr5 107600404 107602989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2842 1 536 U-box Gene Family AT5G65200 55.814 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2842 - - aip:107643932 1003.05