Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2793 ATGGAGATTCAGCAGACCCTAAAGCTCATGGTCCACCACCATAACAGAGGAAAGGAAAACAACACACCAAAGCTGAAATGGAGGAAAATTTTCACTCTCCAACGATCACCGCCGTCATCAAAACCCATCCAAACTCCACCGCCGGAAGAGTTCATCTGCCCAATCTCCGGTACTCTAATGGCTGACCCTGTGATCGTATCTTCCGGTCACTCCTTCGAACGAGCGTCCGTACAATCATGCAAAGATCTCAACTTTACCCCTCAACTCTCCGATGGAACCACCCCTGATTTTTCCACCGTGATCCCCAACCTCGCCCTCAAATCCGCCATCTCCAAATGGTGCCACGCGTCATCCACCCTCCTCCCTCAACCCCCACACCGGTCCCTCACCGACAACCTCGTACGGACCCTCATTTTCTCATCTTCCTCCCGCAAAAACAACGCAAACGAGTTAGTGGGAGAGAGAATGCTAACAGCGAACCCTTCTTGTTGTTCTTCTTCTTCCTCCGTTGAGTCTATTGCCACGTCAGCATCGAGCTCCACCCCACCCGCTCAACTTACTGCAAAACCAAGCTTCTGCTACTCTTCACCTTCTTCCTCCGAACTCGAACCAACAACCCCAGAGGCCGAAGAATTCATCTCGAAGCTTCGGAGCAATCAAGTCTTCGTAATCGAAGAATCTCTGCAGAATCTGAGGAAGCTCACTAGAACTAATGAGGACTCAAGGATCACACTCTGCACCCAAAGGATGCTTTCGTCTTTGCGTGGCCTCGTTGCTTCGAAGTATAAAATGGTTCAAGTGAATGCCGTCGCATGTGTCGTGAACCTCTCTCTGGAGAAAATGAACAAGGTGAGGATCGTACGGTCAGGGTTAGTTCCGCCATTGATAGAAGCTTTGAGGATTGGATCCCCTGAGGCGCAGGAACACGCTTCCGGTGCGCTCTTCAGTCTAGCGCTTGAAGACGATAATAAAACCGCGATTGGGGTTCTCGGAGCTCTTCCACCGTTGATTCACGCGCTTCGAGTTGGGACTGAGCGGACTCGGCATGACTCGGCCTTGGCGCTTTACCATTTGTCGATGGTCCAAAGTAACAGAACCAAATTGGTTAAGATTGGATCGGTTCCGGTTTTAATTGGGATGGTTAAGTCTGGTCAGATGACGGGTCGGGTTTTGATGATTTTGGGCAATTTGGGTTGTGGGCCGGATGGGCGGGCTGCAATGTTGGATGTGGGTATGGTTGAATGTTTGGTCGGGTTGTTGGCTGGGTCCGAGTCGGTTCATGGATCAATAAAGGAGAGCTGTGTGGCGGTGCTATACGTGTTGAGTCACGGAGGGTTGAGGTTTAAGGCCGTAGCGAAGGCGGCAGGAGTGGTGGAGGCGCTCGAGAAGGCAGAGAAGGAGGTGGGGAGTCATCGAGCGAAGGAAAAGGCAATGAGGGTTTTGGAGATGATGAAGGGCAAAGAGGACGATGAGGAGGAAGAGGTGGATTGGGAGGAGCTGCTCGACTCCGGTCTAGGAAGCCGGAGTCACAACTACCATGATGGCGAGTTTGCCGGGCTCAATGGGACGACCTCAATCCTCTGA 1584 0.5196 MEIQQTLKLMVHHHNRGKENNTPKLKWRKIFTLQRSPPSSKPIQTPPPEEFICPISGTLMADPVIVSSGHSFERASVQSCKDLNFTPQLSDGTTPDFSTVIPNLALKSAISKWCHASSTLLPQPPHRSLTDNLVRTLIFSSSSRKNNANELVGERMLTANPSCCSSSSSVESIATSASSSTPPAQLTAKPSFCYSSPSSSELEPTTPEAEEFISKLRSNQVFVIEESLQNLRKLTRTNEDSRITLCTQRMLSSLRGLVASKYKMVQVNAVACVVNLSLEKMNKVRIVRSGLVPPLIEALRIGSPEAQEHASGALFSLALEDDNKTAIGVLGALPPLIHALRVGTERTRHDSALALYHLSMVQSNRTKLVKIGSVPVLIGMVKSGQMTGRVLMILGNLGCGPDGRAAMLDVGMVECLVGLLAGSESVHGSIKESCVAVLYVLSHGGLRFKAVAKAAGVVEALEKAEKEVGSHRAKEKAMRVLEMMKGKEDDEEEEVDWEELLDSGLGSRSHNYHDGEFAGLNGTTSIL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2793 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 290 327 IPR000225 GO:0005515
Ahy5g2793 527 SUPERFAMILY RING/U-box 35 121 - -
Ahy5g2793 527 SMART arm_5 238 278 IPR000225 GO:0005515
Ahy5g2793 527 SMART arm_5 320 360 IPR000225 GO:0005515
Ahy5g2793 527 SMART arm_5 400 443 IPR000225 GO:0005515
Ahy5g2793 527 SMART arm_5 279 319 IPR000225 GO:0005515
Ahy5g2793 527 PANTHER U BOX DOMAIN-CONTAINING 24 511 - -
Ahy5g2793 527 SMART Ubox_2 50 113 IPR003613 GO:0004842|GO:0016567
Ahy5g2793 527 Pfam U-box domain 48 116 IPR003613 GO:0004842|GO:0016567
Ahy5g2793 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 121 IPR013083 -
Ahy5g2793 527 ProSiteProfiles U-box domain profile. 46 120 IPR003613 GO:0004842|GO:0016567
Ahy5g2793 527 SUPERFAMILY ARM repeat 210 488 IPR016024 -
Ahy5g2793 527 Coils Coil 474 494 - -
Ahy5g2793 527 CDD RING-Ubox 52 100 - -
Ahy5g2793 527 Gene3D - 204 483 IPR011989 -
Ahy5g2793 527 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 24 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2793 Ahy-Chr5 106648609 106650854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2793 1 521 U-box Gene Family AT5G40140 52.347 8.42e-170 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2793 - - lja:Lj2g3v1020040.1 589.726