Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2768 ATGCACCAAAATTGGATTTTTGAGCACACCCATTTGAAGATGGCATGGATTCACCACCATATTCAACAAAAAGATGGTTACTTGAGCTACTACTACCCTCCACCACCACCACTACCACCACTATTACCGCCACCATATTTGTCCACACCTTCAACATCTTCTTCAGCTTCATCTTCATCTTCATCTTCATCACCATCTTCTGGTACTAGGATTAGTCCTGCTGTTCTTTTCATAATAGTAATTCTTGCAGTTTTATTCTTCATCTCTGGTGTCCTCCATCTGCTTGTTAGATTTCTCATGAAGCACCCTTCTTCATCTGCATCTGCTCAATCTAATAGAAACCATGAGATTTCAACCTCTGATGCACTACAAAGACAATTACAGCAGCTTTTCCATCTGCATGATTCTGGTTTGGATCAGGCCTTCATCGACGCTCTTCCGGTTTTTCAGTATAAGGAGATTGTGGGGCTGAAGGAGCCATTTGATTGTGCTGTTTGTCTGTGTGAGTTTTCTGAGAAGGATAACCTCAGGTTGTTGCCTATGTGCAGCCACGCCTTTCACATAAGTTGTATAGACACATGGCTTCTTTCGAATTCCACTTGCCCTCTTTGTAGAGGGACACTCCTTACTCCGGGGTTTTCGATGGAGAATCCAATGTTTGATTTTGATGATATGAGGGAAGATGAAGGGTGGCCTTGTGATGGTGAAAATGGATTTACAAATAGGCAGAAGAAAGCTGTGGTTGAAGAAATCAATGATGAGAAAAGGGGAATTTTCCCCGTAAGGCTCGGTAAATTCCGGAAGATGGATGTGGAGACTGGTGAGGAGGGTGTAGTAGTAGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTTTTCAATGGGATCTTATCAGTATGTTGTGGCCAATTCAGAACTCAGGATAGCCTTGAATCATGACCGGAGTGATCACAAATTGAGGCTTGCTGCTGAAGGAAAACAACATTCTGAGAAGGCTGCTTTGGAAGGGGATATGGATGCAAAGAATATTAGGAGTGTGAGTAAAGGTGAGAGCTTTTCAGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGAAAGTTTTCAAGTTCTTCCGAGGCTCATATTGGCATGCCTTCTTATCTTAATTCAGACATGCCTAGGATGAGGGAAGCCGAAGCAGCATGA 1188 0.4301 MHQNWIFEHTHLKMAWIHHHIQQKDGYLSYYYPPPPPLPPLLPPPYLSTPSTSSSASSSSSSSSPSSGTRISPAVLFIIVILAVLFFISGVLHLLVRFLMKHPSSSASAQSNRNHEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDNLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGFSMENPMFDFDDMREDEGWPCDGENGFTNRQKKAVVEEINDEKRGIFPVRLGKFRKMDVETGEEGVVVGETSSSNLDARRCFSMGSYQYVVANSELRIALNHDRSDHKLRLAAEGKQHSEKAALEGDMDAKNIRSVSKGESFSVSKIWLWPKKGKFSSSSEAHIGMPSYLNSDMPRMREAEAA* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2768 395 MobiDBLite consensus disorder prediction 42 68 - -
Ahy5g2768 395 Pfam Ring finger domain 162 205 IPR001841 -
Ahy5g2768 395 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 45 375 - -
Ahy5g2768 395 CDD RING-H2_PA-TM-RING 162 205 - -
Ahy5g2768 395 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Ahy5g2768 395 SUPERFAMILY RING/U-box 142 211 - -
Ahy5g2768 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 45 375 - -
Ahy5g2768 395 MobiDBLite consensus disorder prediction 48 68 - -
Ahy5g2768 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 210 IPR013083 -
Ahy5g2768 395 SMART ring_2 163 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2768 Ahy-Chr5 106175352 106180896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2768 60 372 C3H Transcription Factor Family AT2G18650 42.059 1.89e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2768 - - adu:107490806 590.882