Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2752 ATGAATCGGTGGACCTTAAATTTCTCTCACCGAACTGTGGTGCTCTTGGTGGAGAATCCAACTTTCCCACTTCAAGCGTTTCGATTAACGCAAATTTCAGAGTTGTTGAATGCTGACAGGATCAATGACTCTCAATTAATAGATATTATGGGTGAAGTGGTTGGAAAGGAAGATCCAAAGGAACTCATCACAAGCAAAGGGAAGGAAACGAAGCGTCTAGCTATTTTGGTTGAAGATCTTGATAATTATCGTATTGGGTGTGTGTTGTTTGGGGACATGGTTGATCAAATACTACCATACCTAGATGATGGAAGAGTTGAACCATTGATAGTGGTCTTGCAGTTCTTCCGACCGAGTAGATGGAATGAGAAAACCTCAGTACAGAGTCATTTCGACATTTCTAAGCTACGCATCAATCCCGATCTCGAGGAGGTTCGCGACTTTCGTGACAGGAGGCTTGCCGCTATACCCTCAAATTTGGTCAGAATTAGTCAAGTCAACACAAACAACTCACATTCTGGGGCAGATGAACTTAAGCGGGGTGATGTGACGGTGAACACAATAGAGGAAGCACTAAACTCAACACAGGAAGGCCCTTTGTGGATTGCTGGAACAATTGTGGCAATCAATTCTGGCAAGGATGATTGGTTTTACAAATCATGTAGAAAGTGTCCGAAGAAGGTTGAAACACCAATTGGAAATAGATACGAGTGTGGAAAGTGTGGCCACACTCACGGAAGTGCATCGTTAAGGTTTAAGGTTGAGGTGATGGCCTATGATGGCACTGGTAGCATAACACTGCTTCTATGGGATCGAGAAACGGTTCAACTATGTGGTAGACAAGCAGAACAGATCAAGGATGAGGAGGAACTTTATGCTGAAGGATACCCTGCAGCTCTTGAGAGCCTGTTAGAAAGAAAACTTCTTTTTAAGGTGAATGTCAAATCCTCCAACATCAAGCTCTATGACCAGGTGTATACAGTGATGAAGGTCTGCGAGGATGATACAATTTTTGAAATGCATCTCCCAAATAAAACGTTCTCCACTGTAACTGATACCGGGTGCAGTAACTCGGTGGATTTGTCAGCAGCTATGGTTGATATCAACAATCTTAGTGATTCTCAATATTCTGTGGATGTTGTGGAGGATAGTGTTACAAGCCTCAAGTGCAAAACTCCAGCCAAAACAGCTACCATGGTTTTAAAGCAACAAATTCCCATCAACATTGAGAATGAAGAAGAACTGGGGTTTTCAACCAACAAACTTACCCGCAATCGTGGAAAAAGACAGAAGATGCAACTTCATGATAGCAATGAATGA 1320 0.425 MNRWTLNFSHRTVVLLVENPTFPLQAFRLTQISELLNADRINDSQLIDIMGEVVGKEDPKELITSKGKETKRLAILVEDLDNYRIGCVLFGDMVDQILPYLDDGRVEPLIVVLQFFRPSRWNEKTSVQSHFDISKLRINPDLEEVRDFRDRRLAAIPSNLVRISQVNTNNSHSGADELKRGDVTVNTIEEALNSTQEGPLWIAGTIVAINSGKDDWFYKSCRKCPKKVETPIGNRYECGKCGHTHGSASLRFKVEVMAYDGTGSITLLLWDRETVQLCGRQAEQIKDEEELYAEGYPAALESLLERKLLFKVNVKSSNIKLYDQVYTVMKVCEDDTIFEMHLPNKTFSTVTDTGCSNSVDLSAAMVDINNLSDSQYSVDVVEDSVTSLKCKTPAKTATMVLKQQIPINIENEEELGFSTNKLTRNRGKRQKMQLHDSNE* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2752 439 MobiDBLite consensus disorder prediction 418 439 - -
Ahy5g2752 439 PANTHER REPLICATION FACTOR A 1, RFA1 47 395 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy5g2752 439 SUPERFAMILY Nucleic acid-binding proteins 187 341 IPR012340 -
Ahy5g2752 439 CDD RPA1_DBD_B_like 48 152 - -
Ahy5g2752 439 SUPERFAMILY Nucleic acid-binding proteins 28 151 IPR012340 -
Ahy5g2752 439 Pfam Replication factor-A C terminal domain 204 333 IPR013955 -
Ahy5g2752 439 Gene3D - 163 340 IPR012340 -
Ahy5g2752 439 PANTHER BNAC07G49340D PROTEIN 47 395 - -
Ahy5g2752 439 Gene3D - 21 155 IPR012340 -
Ahy5g2752 439 CDD RPA1_DBD_C 185 343 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2752 Ahy-Chr5 105846496 105848826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2752 2 296 Core DNA Replication Machinery Family AT2G06510 22.330 1.82e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2752 - - aip:107630584 852.818