Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2724 ATGATGAATGGAAAAGCCTCCGTCTCTAAGGAACTTAATGCCAAACACATCAAGGTTTTAGAGGGACTTCTTAGGCTACCTGACAACAGGGAATGTGCAGATTGCCGGAATAAGGCACCACGATGGGCAAGTGTGAACCTAGGAATTTTCATTTGCATGCAGTGTTCAGGAATTCACCGAAGTCTTGGAGTACACATATCACAGGTGCGGTCTACAACTTTGGATACATGGTTGCCAGAACAAGTATCTTTCATGCAACTTATGGGTAATGTGAATGCCAATAAGCACTGGGAGGCTGAGCTGCCGACAAATGTTGACAGAAATCGATATGGAATCGACAAATTTATTCGCGCCAAGTATGTGGATAAAGAATGGGCTTCAAAACATGGTCTACAAGCAGCATCTGCAAAGTCATCTGAAACATTGAGGAATCATCAAAGGAATAGAAGATTGTCTCTTGAGGAAAGCATTCTTGTGGGCCACATGGCACAAATTCAGCCGCCACAGCCGCAAGTAGCAAAATCTCATGAGTTAGAGATGGCCAAAGTTTCCAAGATATATAGACTCGTGAAAATTATTATTGGTTACAAGGATAAGGATGAAGAGTGA 609 0.4253 MMNGKASVSKELNAKHIKVLEGLLRLPDNRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSTTLDTWLPEQVSFMQLMGNVNANKHWEAELPTNVDRNRYGIDKFIRAKYVDKEWASKHGLQAASAKSSETLRNHQRNRRLSLEESILVGHMAQIQPPQPQVAKSHELEMAKVSKIYRLVKIIIGYKDKDEE* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2724 202 CDD ArfGap 20 120 - -
Ahy5g2724 202 SUPERFAMILY ArfGap/RecO-like zinc finger 18 127 IPR037278 -
Ahy5g2724 202 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 2 179 - -
Ahy5g2724 202 Pfam Putative GTPase activating protein for Arf 19 128 IPR001164 GO:0005096
Ahy5g2724 202 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 133 IPR001164 GO:0005096
Ahy5g2724 202 SMART arf_gap_3 18 133 IPR001164 GO:0005096
Ahy5g2724 202 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 2 179 IPR044520 GO:0005096
Ahy5g2724 202 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Ahy5g2724 202 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Ahy5g2724 202 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Ahy5g2724 202 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2724 Ahy-Chr5 105293641 105295329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2724 1 139 C2H2 Transcription Factor Family AT4G05330 43.448 5.56e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2724 K12486 - gmx:100816853 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2423 15 135552407 135554021 Ahy5g2724 5 105293641 105295329 hybridization