Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2707 ATGGCTAATATTGCTAACAGCATCGTCTTTGGGGGTGTTGTTGGGGTTGCAGCACAACTTCCTCAATCTCCGTTTCCATCATTACCCGTTTCAAATTCTCTCATTTTCACCCAAAAACGCAAACTTTATCTTAATTGCTCCGAAACCAACCGCATAACAATCCCTTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCACCGTTCAGCAGCAAGTGTTGTTGCTATGTGTTGGCGTGTCTCCCTCAACCACATGCTTCTGATTCATCATCATCATCAACTTCTTCTAATTCCAATAGCAAACCAAGTTCTTCTTCTGCTGCTCCTCCTTCAACTAAGCTCTATGTTAGTGGGTTATCTTTTCGAACCACTGAAGAAAGCTTGCGAAATGCATTTATGAATTTTGGTCAAGTTTTAGAAGTGAATTTGGTGATGGATAAAATTGCAAATAGACCAAGAGGGTTTGCATTTCTTAGATATGCAACTGAACAGGAATCTCTGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCAAGATCAGAACTAAGGCAAAGACAAAACACTAGATACTAG 612 0.4036 MANIANSIVFGGVVGVAAQLPQSPFPSLPVSNSLIFTQKRKLYLNCSETNRITIPFPSSSSSSSSSSSPFSSKCCCYVLACLPQPHASDSSSSSTSSNSNSKPSSSSAAPPSTKLYVSGLSFRTTEESLRNAFMNFGQVLEVNLVMDKIANRPRGFAFLRYATEQESLKAIEGMHGKFLDGRVIFVEVAKPRSELRQRQNTRY* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2707 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 184 IPR000504 GO:0003723
Ahy5g2707 203 SUPERFAMILY RNA-binding domain, RBD 102 201 IPR035979 GO:0003676
Ahy5g2707 203 MobiDBLite consensus disorder prediction 89 112 - -
Ahy5g2707 203 PANTHER TRANSFORMER-2-RELATED 12 200 - -
Ahy5g2707 203 Gene3D - 83 203 IPR012677 -
Ahy5g2707 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Ahy5g2707 203 PANTHER RNA-BINDING PROTEIN 1 12 200 - -
Ahy5g2707 203 SMART rrm1_1 114 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2707 Ahy-Chr5 104846580 104849711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2707 113 203 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.54e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2707 - K13195 ahf:112802436 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2443 15 136485735 136488773 Ahy5g2707 5 104846580 104849711 hybridization