Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2687 ATGTGTACTAGAGGACATTGGAGACCAGCTGAAGATGAGAAGCTTAGGGAGCTGGTGGAACGCTATGGACCTCATAATTGGAATGCCATAGCTGAGAAGCTCCGTGGAAGATCAGGGAAAAGTTGTAGGTTAAGATGGTTCAATCAATTGGACCCAAGAATAAATAGAAACCCGTTCACAGAGGAAGAAGAAGAACGGCTTTTAGCATCTCATAGTATTCATGGAAATAGATGGTCAGTGATTGCAAGACACTTCCCTGGAAGAACTGATAATGCTGTCAAGAATCATTGGCATGTGATGATGGCAAGAATACGCAGAGAAAGATCTAAAGTTTATGCAAAACGACCACTTCATCATAGAACATTTTTTTCTCCAAACCTTCAACAACAACAACAACAAGAGGATCATGATGATGAGACAACAAACTTTGACACAAAAAATAATATATCATACTGTCTTGTTGACAAGTTTCATGGAAAATATAGCTACCCTGCTTGTCTCACTTATGCTACTTTCCAACTTCCTAACAAGTTTCACTTTCAAGGTCCAACTTCTTGTGCTACATTGCTTCAAGAAAGAAGTCAATCAATTGAGTTCTATGACTTTCTTCGAGTAAACACAGATTCCAACAAGAGTGAAGTGAGTAACAACAATGGCAAAAAGGAAGATGAAGAAGTGAATCAAGATCCTGTGGGGCATCACAGCAAGGATGGAATTCCATTCATTGATTTTTTGTCTACTCAAAGTTCCTAA 753 0.3878 MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLLASHSIHGNRWSVIARHFPGRTDNAVKNHWHVMMARIRRERSKVYAKRPLHHRTFFSPNLQQQQQQEDHDDETTNFDTKNNISYCLVDKFHGKYSYPACLTYATFQLPNKFHFQGPTSCATLLQERSQSIEFYDFLRVNTDSNKSEVSNNNGKKEDEEVNQDPVGHHSKDGIPFIDFLSTQSS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2687 250 Gene3D - 4 55 - -
Ahy5g2687 250 PANTHER MYB PROTEIN-RELATED 1 249 - -
Ahy5g2687 250 Gene3D - 57 140 - -
Ahy5g2687 250 ProSiteProfiles Myb-like domain profile. 4 50 IPR001005 -
Ahy5g2687 250 MobiDBLite consensus disorder prediction 215 232 - -
Ahy5g2687 250 MobiDBLite consensus disorder prediction 122 142 - -
Ahy5g2687 250 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Ahy5g2687 250 MobiDBLite consensus disorder prediction 209 239 - -
Ahy5g2687 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Ahy5g2687 250 CDD SANT 7 48 IPR001005 -
Ahy5g2687 250 PANTHER MYB-RELATED PROTEIN A-LIKE 1 249 - -
Ahy5g2687 250 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Ahy5g2687 250 Pfam Myb-like DNA-binding domain 7 67 - -
Ahy5g2687 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Ahy5g2687 250 CDD SANT 58 101 IPR001005 -
Ahy5g2687 250 SMART sant 55 103 IPR001005 -
Ahy5g2687 250 SMART sant 3 52 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2687 Ahy-Chr5 104198592 104202447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2687 1 250 MYB Transcription Factor Family AT1G17950 52.549 1.86e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy5g2687 Myb_DNA-bind_6 8.80E-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2687 K09422 - gmx:100811746 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2469 15 137414994 137418976 Ahy5g2687 5 104198592 104202447 hybridization