Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2672 ATGTTAGCGAATAACTCTTCAGTAGCTCCAAGTGAACCATTTTCTTGTGCTGATAATAGTAATGGCACTCCAAGCAATAAAAGGAAGAGAAGACCCGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCGCTGTCGCCAAAGACGTTATTGGAATCGGATCGATATGTGTGTGAGATCTGCAACCAAGGCTTCCAAAGGGACCAGAACCTGCAGATGCATCGGAGGAGGCACAAGGTGCCGTGGAAGCTTCTAAAGAGGGAGACGCCGGTGGTCAGGAAGAGGGTCTTCGTGTGTCCGGAGCCTACTTGCCTGCACCACGACCCTTGTCACGCACTCGGAGACCTTGTTGGGATCAAGAAGCACTTCCGCCGCAAGCACAGCAACCACAAACAGTGGGTCTGCGAGCGCTGCTCCAAGGGCTACGCGGTGCAGTCCGATTACAAGGCTCACCTCAAGACCTGCGGCACTCGCGGCCACTCTTGTGATTGCGGCCGCGTCTTCTCCAGGGTGGAGAGCTTTATTGAGCATCAAGATGCTTGCAACATGGGGAGGCTTAGGACGGAATCTCATCATAATCATAATCATAATCATCAACCACCACCAACTCCAACTGCATGTTTATCAAGAACAGCTTCAAGTCCAAGCCCTTCAAGAAGTGAAACCAATTTCAGCACTGCTCCATGGCAACCAACATCATCAACAACAACAACAACAACACCAACAAGCCTTGTTGTGATCACAAAACCAATAACAACAACCACAGAACCACCTTTCTTCAACAACACTAACCCTACCCCAATTCTAGCCACTGCTGAAACATTCCTATTCAAGAAGAGTAACACCAGCAACAAACTCCATCACCCAAACTTGGATCTTCAGCTCTCCACCACCACCACCACCACCATGATGATGAACAACAACAATTCGATCCCCAATGTTGATTTAACACTATCACCAAAGAGTGATAATAATCATCATCAGCAGCTTCAAAACCAGCAGCATTCAACACAGCTGCAACTCTCCATTGGTGGAACAACCTCGTCAGACATTAGCGAGAACAATAACAAGAACGACTCATCAAACAGGAACTCGTCACCGAAAGAGAGCATCAACAGCAGCAACGAGAACAAGCATGCGACAGCAACAAGCATGGCTTTACGGGTTCAAGAACAAGCGAGGGAGCAACTAAGGTTAGCCATGGCGGAGAAAGCGTACGCAGAAGAAGCAAGGAAACAAGCAAAGAGGCAGATAGAAATGGCGGAACAAGAGTTCAACAATGCAAAGAGGATAAGGCAACAAGCGCAAGCTGAATTCGACAAAGCTTGCGCTCTCAAGGAACATGCAATGAAGAAGATAAACTCAACCATCATGCAAATCACGTGCCATTCTTGCAAGCAACACTTTCATCTTCAACCACCACCAGTATCTGCTACAGCACCACCAGATGAAAATTCCTTGGTTCTCAGTTACATGTCTTCTGGAATCACCACCGAAGGTGCTGGAGAAGTTATAGAGAACAATAATAACGATCATGATACTACTACTACTACTATTACTGATAATAATAATAATAATGGGAAGAAAGCATCTACAGCTACTAACTCTTAG 1611 0.4668 MLANNSSVAPSEPFSCADNSNGTPSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRTESHHNHNHNHQPPPTPTACLSRTASSPSPSRSETNFSTAPWQPTSSTTTTTTPTSLVVITKPITTTTEPPFFNNTNPTPILATAETFLFKKSNTSNKLHHPNLDLQLSTTTTTTMMMNNNNSIPNVDLTLSPKSDNNHHQQLQNQQHSTQLQLSIGGTTSSDISENNNKNDSSNRNSSPKESINSSNENKHATATSMALRVQEQAREQLRLAMAEKAYAEEARKQAKRQIEMAEQEFNNAKRIRQQAQAEFDKACALKEHAMKKINSTIMQITCHSCKQHFHLQPPPVSATAPPDENSLVLSYMSSGITTEGAGEVIENNNNDHDTTTTTITDNNNNNGKKASTATNS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2672 536 Coils Coil 397 438 - -
Ahy5g2672 536 MobiDBLite consensus disorder prediction 1 43 - -
Ahy5g2672 536 MobiDBLite consensus disorder prediction 1 28 - -
Ahy5g2672 536 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 498 - -
Ahy5g2672 536 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Ahy5g2672 536 MobiDBLite consensus disorder prediction 189 241 - -
Ahy5g2672 536 Pfam Zinc-finger of C2H2 type 56 74 - -
Ahy5g2672 536 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Ahy5g2672 536 PANTHER OS03G0310200 PROTEIN 1 498 IPR039288 GO:0009630
Ahy5g2672 536 MobiDBLite consensus disorder prediction 197 241 - -
Ahy5g2672 536 MobiDBLite consensus disorder prediction 306 383 - -
Ahy5g2672 536 SMART c2h2final6 133 160 IPR013087 -
Ahy5g2672 536 SMART c2h2final6 97 127 IPR013087 -
Ahy5g2672 536 SMART c2h2final6 56 78 IPR013087 -
Ahy5g2672 536 MobiDBLite consensus disorder prediction 506 536 - -
Ahy5g2672 536 SUPERFAMILY beta-beta-alpha zinc fingers 53 79 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2672 Ahy-Chr5 103841756 103844838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2672 336 503 C2H2 Transcription Factor Family AT1G25250 43.452 1.30e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy5g2672 zf-met 0.031 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2672 K25871 - gmx:100800187 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2489 15 137963328 137966518 Ahy5g2672 5 103841756 103844838 hybridization