Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2670 ATGGAAGGAGGAGTAGTACCATCGTCTTCTTCTTCCTCAGCATATAGAGAGTGCTTGAGGAACCATGCAGCCAGCCTCGGCAGCTATGCCACCGACGGCTGCGGAGAGTTCACCTTGGATGACATCAGCGGTGGCAGCAATAGTCTGCAGTGTGCAGCATGTGGCTGCCACCGCAATTTTCATCGCAAAGTGAACAATTACCCTCAGAACGGAGCGTCCCCTTCTGAGGGTACTGCAAACACGGCTCACGAGCTCATGAACTACTCAGAAGAGCGCGCCATAGCCGAAGAAGGCATAGAAAGAGGAATAATAATGGGAACTAATAATAATAATATTAATATTAATAGCAGCAGCAACAACAAAAAGAGGTTCAGGACGAAATTCAGCGAGGAGCAGAAGGAGAAGATGTTAGGGTTTGCGGAGAAGATTGGTTGGAAGCTTCAAAGAATTAGCAAAGAGACTGAAGATGAAGTTGAGAGGTTCTGTAGAAGTGTTGGTGTGAGTAGACAAGTTTTCAAGGTTTGGATGCATAACCACAAGAACAATTCTTCCTTTAATTCTTCTAATTCTGCTTCCAATGGCAATGCTTCATCTCTCACTCAGTAG 606 0.4554 MEGGVVPSSSSSSAYRECLRNHAASLGSYATDGCGEFTLDDISGGSNSLQCAACGCHRNFHRKVNNYPQNGASPSEGTANTAHELMNYSEERAIAEEGIERGIIMGTNNNNININSSSNNKKRFRTKFSEEQKEKMLGFAEKIGWKLQRISKETEDEVERFCRSVGVSRQVFKVWMHNHKNNSSFNSSNSASNGNASSLTQ* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2670 201 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 10 190 - -
Ahy5g2670 201 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 121 181 IPR006455 -
Ahy5g2670 201 MobiDBLite consensus disorder prediction 182 201 - -
Ahy5g2670 201 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 15 63 IPR006456 -
Ahy5g2670 201 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 15 64 IPR006456 -
Ahy5g2670 201 SUPERFAMILY Homeodomain-like 109 181 IPR009057 -
Ahy5g2670 201 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 190 - -
Ahy5g2670 201 Pfam ZF-HD protein dimerisation region 14 65 IPR006456 -
Ahy5g2670 201 Gene3D - 106 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2670 Ahy-Chr5 103737511 103738391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2670 15 181 ZF-HD Transcription Factor Family AT4G24660 42.541 9.74e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ahy5g2670 ZF-HD_dimer 2.90E-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2493 15 138089105 138089872 Ahy5g2670 5 103737511 103738391 hybridization