Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2628 ATGTACAACAGTCTGTTCATTCTTAAGTTACTTATGATAGCTGTAACTAACAGCTGTCCTATGGTAGCTGGCACTGTTCTCACAGCCAACAGTTCTTCTCTAGACTTTACCAACTCACTCTACTACAATGAATGGTGTTTGGCCGAGTGGATGGTGCCTGAAGTGTTAAGAAATGAACCTTCAAATGAAAAGTGCGATGTTTATAGCTTTGGAGTCATATTATGGGAGCTCTCTACTTTGCAACAGCCCTGGGGTGGAATGAATCCGATGCAAGTTGTGGGTGCTGTCGGTTTCCAGCATTGTCGCCTTGTCATTCCAGATGAGATGGACCCTGCTATCATGGAGACATGGATATTATCAAGCAATCCTGGAAGACCGCTGAAGCCGATCATTGGTTCTCAATCTCAAGTGCCGATACCGGGTAGGCATGAGAAGGCTCAGTCATCAAGAGTTGCATACAAAGTTGTTATACCCTCTTACACATACCAGATAAAAATTGGGAGAACTATTTCCGCAGAGATAGCAAGGTTTAGTCGTCTACGTCTTGGACCAGAGAGCAGAGAGTATTCTCTTCTCCAAATCCCTAATTTTGTTTCCTTCCCTTCCTCTTCATCCCTTCACTCTCATTCTGAGCCCCCATCCCTTCGTCAAGTTGATGAAGCTGTTGATTCCTTCACTCGCATGCTCTCTATGCGTCGCCCTCCATCAATAATCCAATTTAACAAGATTTTGGGGTCTCTTGCCAAGACCAACCATTTCCCCATTTCCATTTCCCTTTTTCGGCAATTGCAAGCCAGAGGAATCGCTCCCGACTTATTTACTTTGAGCATCCTAATTAATTGTTGTTGCGGCGTGGGTCGTATGACGCTTGCTTTCTCTGTATTGGCCAAGATTTTCAGAATGGATTATCAACCTGATACGGTAACATTGACAACAATCCTAAAAGGTCTCTATCTCTGTGGTAGTGTTGAAAAAGCAGTGCGCTTTCATGACAGAGTGCTGGCTCATGGATTTCACTTTAATCAAGTCACTTATGGGACGTTGATCAATGGGCTCTGTAAGACCGGTCACACATCAGCTGCTATTCAAATGTTGAGAAAGATCCCACGGTATGGAATTGCTCCTAATGTCTTCATGTACAGCGCAATTATTGATAGCCTCTGCAAGGATACACTTGTAAGTCAGGCTTTTCATTTATTCTCTGAAATGCTTGCTAAGGGAATTTCTCCCAATGTTATCACATACAGTTCTCTCATTTTTGGATTGTGTCTTGAGGGTCAATATAAGGAAGCCATTGATTTGTTAAGTGATATGGTGCTTAGAAACATTACTCCAAATGTTTGTACCTATAGTATTTTGATCGATGGGTTATGCAAGGATGGAAAGGTCAAAGATGCTAAGAGTGTATTGACTGTAATGGCAAAACATGGTGTGAAACCAGATGTGGTTACTTATAGCAGCTTAATGGATGGATATTGTTTGGTTAATGAGGTAAATAAGGCAAAATATACATTCAACACAATGGCCGAGAATAGAGTGTTTCCTAATGTTCGGACTTACAATATCATGATTAATGGCTTTTGCAAAAGTGAAATGATCGATGACGCCTTGAATCTCTTCGAAGAGATGCATCGCAAGAACTTGGTTCCTGACACGGTAACTTACAGTACTCTAATTGATGGCTTGGGAAAATCAAGGAGAATCCTTTGTGCCTTGGAGCTTCTTGAAAAGATGCATGATCGAGGTCAACCCGCTAATATAGTCACTTACAGTTCTTTGATGGATGCTTTGTTCAATATCAAACAACATGACAAGGCACTTATGTTATTCAATCAAATGAAAGAGAGTGGCATTGATCCAAATATATTTACATACACCATACTTATAGATGGCCTGTGCAAAAGTGGAAGACTTAAAAATGCAAAAGAGATTTTTCAAGAGCTTTCCATTAAAGGCTATCACCTAAACACAAGGATATACAATGTTATGATCAATGGGCTCTGCAAAGAGGGCCTACTTCATGAAGCATTGGCCTTAAAGTTGGAAATGGAAGACAATGGTTGCTCTCCGGATGCTGTAACTTACGAAACAACTATTCGTGCTCTGTTGGAAAAAGGTGAAAATGATCAAGCGCTGAAACATCTTCATGAAATGATTGCTAGAGGCTTATTGAAAAGACACTAA 2184 0.4093 MYNSLFILKLLMIAVTNSCPMVAGTVLTANSSSLDFTNSLYYNEWCLAEWMVPEVLRNEPSNEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHCRLVIPDEMDPAIMETWILSSNPGRPLKPIIGSQSQVPIPGRHEKAQSSRVAYKVVIPSYTYQIKIGRTISAEIARFSRLRLGPESREYSLLQIPNFVSFPSSSSLHSHSEPPSLRQVDEAVDSFTRMLSMRRPPSIIQFNKILGSLAKTNHFPISISLFRQLQARGIAPDLFTLSILINCCCGVGRMTLAFSVLAKIFRMDYQPDTVTLTTILKGLYLCGSVEKAVRFHDRVLAHGFHFNQVTYGTLINGLCKTGHTSAAIQMLRKIPRYGIAPNVFMYSAIIDSLCKDTLVSQAFHLFSEMLAKGISPNVITYSSLIFGLCLEGQYKEAIDLLSDMVLRNITPNVCTYSILIDGLCKDGKVKDAKSVLTVMAKHGVKPDVVTYSSLMDGYCLVNEVNKAKYTFNTMAENRVFPNVRTYNIMINGFCKSEMIDDALNLFEEMHRKNLVPDTVTYSTLIDGLGKSRRILCALELLEKMHDRGQPANIVTYSSLMDALFNIKQHDKALMLFNQMKESGIDPNIFTYTILIDGLCKSGRLKNAKEIFQELSIKGYHLNTRIYNVMINGLCKEGLLHEALALKLEMEDNGCSPDAVTYETTIRALLEKGENDQALKHLHEMIARGLLKRH* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Ahy5g2628 727 Gene3D Transferase(Phosphotransferase) domain 1 25 124 - -
Ahy5g2628 727 Pfam PPR repeat family 305 354 IPR002885 -
Ahy5g2628 727 Pfam PPR repeat family 586 634 IPR002885 -
Ahy5g2628 727 Pfam PPR repeat family 235 283 IPR002885 -
Ahy5g2628 727 Pfam PPR repeat family 375 423 IPR002885 -
Ahy5g2628 727 Pfam PPR repeat family 515 563 IPR002885 -
Ahy5g2628 727 Pfam PPR repeat family 656 702 IPR002885 -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Ahy5g2628 727 SUPERFAMILY HCP-like 517 716 - -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Ahy5g2628 727 Gene3D Tetratricopeptide repeat domain 653 720 IPR011990 GO:0005515
Ahy5g2628 727 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 217 567 - -
Ahy5g2628 727 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 302 672 - -
Ahy5g2628 727 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 519 723 - -
Ahy5g2628 727 Pfam PPR repeat 477 508 IPR002885 -
Ahy5g2628 727 Pfam PPR repeat 441 473 IPR002885 -
Ahy5g2628 727 SUPERFAMILY Protein kinase-like (PK-like) 41 114 IPR011009 -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
Ahy5g2628 727 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Ahy5g2628 727 TIGRFAM PPR: pentatricopeptide repeat domain 659 692 IPR002885 -
Ahy5g2628 727 TIGRFAM PPR: pentatricopeptide repeat domain 413 447 IPR002885 -
Ahy5g2628 727 TIGRFAM PPR: pentatricopeptide repeat domain 448 482 IPR002885 -
Ahy5g2628 727 TIGRFAM PPR: pentatricopeptide repeat domain 588 622 IPR002885 -
Ahy5g2628 727 TIGRFAM PPR: pentatricopeptide repeat domain 483 517 IPR002885 -
Ahy5g2628 727 TIGRFAM PPR: pentatricopeptide repeat domain 343 377 IPR002885 -
Ahy5g2628 727 TIGRFAM PPR: pentatricopeptide repeat domain 379 412 IPR002885 -
Ahy5g2628 727 TIGRFAM PPR: pentatricopeptide repeat domain 623 656 IPR002885 -
Ahy5g2628 727 TIGRFAM PPR: pentatricopeptide repeat domain 553 582 IPR002885 -
Ahy5g2628 727 TIGRFAM PPR: pentatricopeptide repeat domain 519 552 IPR002885 -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Ahy5g2628 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 691 725 IPR002885 -
Ahy5g2628 727 Pfam Protein tyrosine and serine/threonine kinase 48 115 IPR001245 GO:0004672|GO:0006468
Ahy5g2628 727 Gene3D Tetratricopeptide repeat domain 463 565 IPR011990 GO:0005515
Ahy5g2628 727 Gene3D Tetratricopeptide repeat domain 217 356 IPR011990 GO:0005515
Ahy5g2628 727 Gene3D Tetratricopeptide repeat domain 566 652 IPR011990 GO:0005515
Ahy5g2628 727 Gene3D Tetratricopeptide repeat domain 357 462 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2628 Ahy-Chr5 102678449 102683842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2628 606 724 Glycosyltransferase AT1G05670 29.412 7.31e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Ahy5g2628 PK_Tyr_Ser-Thr 1.00E-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2628 - - ahf:112803886 900.582