Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2588 ATGGGGGAAACAAATGCACGGTCAAATTCGCATAAGCATTGGCGTTTTGGTACGAATTCGCAGCAGAATATTCAATTGCGTTCACGGTCGAGTTCGAATTCGACATCTTCGTCACCGGAGTCACCACCAAAGTCTCTGATGGAGAACCTTATGGGACTTCTTAGGGTTCGAATCAAGCGTGGCGTCAACCTCGCCGTTCGTGATGTTCGTAGTAGCGATCCCTATGTTGTCATCAAGATGGGTAAACAGAAACTCAAGACTCGTGTGATTAAAAGGGATGTTAATCCTGAGTGGAATGAGGACCTCACGCTTTCGGTTGTAGATCCGCATGCTTCAGTCTCACTGACTATATATGACCACGATACATTTAGCAAAGATGACAAAATGGGAGATGCAGAGTTTGAAATCTTACCATTTATAGAAGCCTTGAAGATGAATGTGACAGGCCTGCCAAATGGTACTGTGGTCAAAAGAATACAACAAAGCCGGGATAACTATCTCGCAGATGAGAGCCGCATCACTTATATCAACGGTAAGCTTGTTCAAGATATGATCCTTAGACTGCGAAACGTGGAATGTGGTGAACTGGAAATCCAGCTAAATTGGATTGATCTTCCTGGGTCCAAGGGTTTATGA 636 0.4434 MGETNARSNSHKHWRFGTNSQQNIQLRSRSSSNSTSSSPESPPKSLMENLMGLLRVRIKRGVNLAVRDVRSSDPYVVIKMGKQKLKTRVIKRDVNPEWNEDLTLSVVDPHASVSLTIYDHDTFSKDDKMGDAEFEILPFIEALKMNVTGLPNGTVVKRIQQSRDNYLADESRITYINGKLVQDMILRLRNVECGELEIQLNWIDLPGSKGL* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2588 211 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 42 210 IPR044562 -
Ahy5g2588 211 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 42 210 - -
Ahy5g2588 211 SMART C2_3c 53 148 IPR000008 -
Ahy5g2588 211 MobiDBLite consensus disorder prediction 1 46 - -
Ahy5g2588 211 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 48 143 IPR035892 -
Ahy5g2588 211 Pfam C2 domain 52 136 IPR000008 -
Ahy5g2588 211 Gene3D C2 domain 47 209 IPR035892 -
Ahy5g2588 211 ProSiteProfiles C2 domain profile. 38 152 IPR000008 -
Ahy5g2588 211 CDD C2_ArfGAP 52 194 - -
Ahy5g2588 211 MobiDBLite consensus disorder prediction 11 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2588 Ahy-Chr5 101801550 101804123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2588 84 211 C2H2 Transcription Factor Family AT1G70790 56.923 1.77e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2588 - - adu:107490639 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2633 15 142153015 142155555 Ahy5g2588 5 101801550 101804123 hybridization
Ahy13g3994 13 139390373 139391423 Ahy5g2588 5 101801550 101804123 PCT
Ahy3g3721 3 136574699 136575844 Ahy5g2588 5 101801550 101804123 PCT
Ahy5g2588 5 101801550 101804123 Ahy13g3994 13 139390373 139391423 PCT
Ahy5g2588 5 101801550 101804123 Ahy3g3721 3 136574699 136575844 PCT