Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2574 ATGGTAATGATTGCTTTCTACTGGGCACACTACGAACCATGTATTCTACGCTCCAAGAGCTGGTTGATATTTCTGCCAAAAGTAAAGCACCAAGAAATGCTGTCACTAGGGAAGAATCTGCTGAAATTGCGAAAGAAAAGTTTGTTACTTAATCAGGGAAGTCAAGGTTACAAAGACAAGTGGCAGAAAGCCATTGGATTTTATTCAGAAACCATAAAACTAAGCAGCAACAATGCAACATACGACAGTAATAGGTCCCAAGCTTATCTAGAACTTGGAAGTTACCTCCAAGCTGAGGCAGATTGTACAAAAGCAATTAACCTTGACAAAAAGAATGTCAAAGTTTATTTTAGAAGAGGTAGAGCTAGAGAGATGCTTGGCTACTATACCGATGCACTTGATGATTTTCAACATGCCTTGGTACTTGAACTAACCAACAAAATGGCATCCTCCGCCGCCGAAAGATTGAGGAAACTATTCCAGTAG 486 0.3992 MVMIAFYWAHYEPCILRSKSWLIFLPKVKHQEMLSLGKNLLKLRKKSLLLNQGSQGYKDKWQKAIGFYSETIKLSSNNATYDSNRSQAYLELGSYLQAEADCTKAINLDKKNVKVYFRRGRAREMLGYYTDALDDFQHALVLELTNKMASSAAERLRKLFQ* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2574 161 SMART tpr_5 113 146 IPR019734 GO:0005515
Ahy5g2574 161 SMART tpr_5 79 112 IPR019734 GO:0005515
Ahy5g2574 161 SUPERFAMILY TPR-like 58 149 IPR011990 GO:0005515
Ahy5g2574 161 Gene3D Tetratricopeptide repeat domain 31 161 IPR011990 GO:0005515
Ahy5g2574 161 Pfam Tetratricopeptide repeat 84 112 IPR019734 GO:0005515
Ahy5g2574 161 PANTHER AMIDASE 1 51 161 - -
Ahy5g2574 161 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 51 161 - -
Ahy5g2574 161 ProSiteProfiles TPR repeat profile. 113 146 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2574 Ahy-Chr5 101626647 101631735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2574 58 142 U-box Gene Family AT3G07370 32.941 4.06e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2574 - - ahf:112802326 307.76