Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2564 ATGGACCCATCCTCGATCCCTCCATCAGCAGGTCCGGCCACCAACACCCTCCCCATGCCAACCATCCCCGCCACCGTGCCCTTCCTCCAGGAGCCGAACAACCACTCTCCTCCGCCGCCGGCCAGCACCGGAACCAACGCTGCTCCCAGCCACCCTCCCTACGCCGAGATGATATACACGGCAATCGAAGCGCTGAAGGAGAAAGAGGGTTCGAGCAAGAGAGCGATAGCGAAGTACATAGAGCAAGTGTACAAGGAGCAGTTACCACCAACTCACTCGACTTTGCTCACTCACCACCTCAACCGACTCAAGAACAACGGCATGCTTCAAATGGTCAAGAAATCATATAGGCTTCCTAGATCTGCTGACGCTACCGACCCTAACCCTTCTCCTTCTGGGTCCTCCAGGCCCAGGGGACGCCCTCGTAAGGCCCAGATTCAGCCCCAGCCCCAATCACAGCTCCCCCAGCTTGAGGCACAGCCTCAGCCACAGCTGGCTGGGAATGTTAATGTTAATGTCCCTCAGCAGCAGCAGCAGAATGCTGAGCCTGTGTGGGCCGCGCTAGGGCTTGCAGATGAGCCTGCGGTGCAGCCTGGCTCGGAGCTGAAGAAGAGGGGTCGTCCGAAGAAGAATGAGGTTGCACCAGGTGCTGCGGAGACGCCAAATACAAGCCTGGCTGTTGCTACGCCGGGTCGGAGAGGGCGTCCTCCGGGCTCGAAGAACTCGAAGAGGAAGCCTGGTCGTCCTCCGAAGGCTTCGCCTGCTGGTGGTCCGGCTGCTGCTGCTGTGGCGGATGCTGCGGCTTCTGGGGGGCCTAAGAGGCGTCCGGGCCGACCGGCCAAGAATCAGCAAGTGGCGACTCCTGTTACGTTCGCTGCTGTTTCTGATCCTGACGCCGCTGTGACTGCATTGCCGCCGGCTCCCGTGGTTGTGCCTGCCGGTGGTATTCCTGTTGCTGGGTCTCCCAGGCCCAGGGGACGCCCGAAGAGGATTCTTGGTGAGGCTGTCACGGGTGCTATAATTCCTGTTGCTGTCGGTGCCACTGGCCGCGGAAGGGGCCGCGGACGTGGACGCGCTCGCGGTTACGGCTTCGGTACCTTCGGACGTGGACGTGGTCGCGGGCGTGGAAGGCCAGTTGGCCGCCCGAGGAAGGATATAATATTGGCGGGTACTTCACAAAATGAAGATCTCCGGAGGAAGCTTGAACACTTCCAAGCAAAAGTGAAGGAATCTCTGGCCGTGCTTAGGCCTTACTTCAACCATGAAAGTCCAGTAACTGCACTTGCAGCACTCCAAGAATTGGATGTACTGGGAACTATGGACCTCAATGCACCCCTAAGAGATGAAACTATTCCTCAACAACCACAGCAGCAGCTGCCTCTGCAGCAGCAGCCGCCACCGATGCAGCCGTCGCCATCACCACCACCACCGCCTCAACCGCACCAGCAGCTGCCACAACCACAGCTCATGTTCCCACAGCAATTCCACCAGTTTAACCTGCCGCAGTTCCAGCAGCAGCCACCGCAGTATCAGCACCAACACCAGCCCCCACCCCAGCAGCAACTGTTCCATCCATAG 1578 0.5944 MDPSSIPPSAGPATNTLPMPTIPATVPFLQEPNNHSPPPPASTGTNAAPSHPPYAEMIYTAIEALKEKEGSSKRAIAKYIEQVYKEQLPPTHSTLLTHHLNRLKNNGMLQMVKKSYRLPRSADATDPNPSPSGSSRPRGRPRKAQIQPQPQSQLPQLEAQPQPQLAGNVNVNVPQQQQQNAEPVWAALGLADEPAVQPGSELKKRGRPKKNEVAPGAAETPNTSLAVATPGRRGRPPGSKNSKRKPGRPPKASPAGGPAAAAVADAAASGGPKRRPGRPAKNQQVATPVTFAAVSDPDAAVTALPPAPVVVPAGGIPVAGSPRPRGRPKRILGEAVTGAIIPVAVGATGRGRGRGRGRARGYGFGTFGRGRGRGRGRPVGRPRKDIILAGTSQNEDLRRKLEHFQAKVKESLAVLRPYFNHESPVTALAALQELDVLGTMDLNAPLRDETIPQQPQQQLPLQQQPPPMQPSPSPPPPPQPHQQLPQPQLMFPQQFHQFNLPQFQQQPPQYQHQHQPPPQQQLFHP* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2564 525 PANTHER HISTONE H1-LIKE 33 336 - -
Ahy5g2564 525 MobiDBLite consensus disorder prediction 1 52 - -
Ahy5g2564 525 MobiDBLite consensus disorder prediction 198 212 - -
Ahy5g2564 525 PANTHER HISTONE H1 341 456 - -
Ahy5g2564 525 Coils Coil 394 414 - -
Ahy5g2564 525 SMART AT_hook_2 372 384 IPR017956 GO:0003677
Ahy5g2564 525 SMART AT_hook_2 353 365 IPR017956 GO:0003677
Ahy5g2564 525 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Ahy5g2564 525 SMART AT_hook_2 322 334 IPR017956 GO:0003677
Ahy5g2564 525 SMART AT_hook_2 243 255 IPR017956 GO:0003677
Ahy5g2564 525 SMART AT_hook_2 273 285 IPR017956 GO:0003677
Ahy5g2564 525 SMART AT_hook_2 202 214 IPR017956 GO:0003677
Ahy5g2564 525 SMART AT_hook_2 230 242 IPR017956 GO:0003677
Ahy5g2564 525 MobiDBLite consensus disorder prediction 32 46 - -
Ahy5g2564 525 MobiDBLite consensus disorder prediction 486 525 - -
Ahy5g2564 525 MobiDBLite consensus disorder prediction 196 289 - -
Ahy5g2564 525 CDD H15 48 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy5g2564 525 MobiDBLite consensus disorder prediction 7 31 - -
Ahy5g2564 525 PRINTS AT-hook-like domain signature 271 282 IPR017956 GO:0003677
Ahy5g2564 525 PRINTS AT-hook-like domain signature 320 330 IPR017956 GO:0003677
Ahy5g2564 525 PRINTS AT-hook-like domain signature 135 145 IPR017956 GO:0003677
Ahy5g2564 525 Pfam linker histone H1 and H5 family 51 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy5g2564 525 SMART h15plus2 48 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy5g2564 525 MobiDBLite consensus disorder prediction 455 525 - -
Ahy5g2564 525 PANTHER HISTONE H1 33 336 - -
Ahy5g2564 525 MobiDBLite consensus disorder prediction 350 382 - -
Ahy5g2564 525 MobiDBLite consensus disorder prediction 119 161 - -
Ahy5g2564 525 MobiDBLite consensus disorder prediction 459 485 - -
Ahy5g2564 525 MobiDBLite consensus disorder prediction 145 161 - -
Ahy5g2564 525 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 50 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy5g2564 525 PANTHER HISTONE H1-LIKE 341 456 - -
Ahy5g2564 525 Gene3D - 46 128 IPR036388 -
Ahy5g2564 525 SUPERFAMILY "Winged helix" DNA-binding domain 48 122 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2564 Ahy-Chr5 101353651 101361460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2564 57 169 Single Myb Histone (SMH) Gene Family AT1G49950 30.252 2.83e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2564 - - lang:109358509 366.311