Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2556 ATGGCTCCCCGCGCCGACCAAGACAGTCTCTCAAGCACCGATGACGACGAAAGCGACGACGAAGGCCTCAAGGAGGACTTGGCGGCGCTCTCTAGGGCCTTCGATATGAGCGGCGCTGACTCCACCGCGCCTCCCGACCCCGTCCTTCAAGTGGATTTCGACGACGACTTGCGCGGCGGTGTCTCCACAGCTCCTCCTGCCGCCGCGTTCACTGACCTCGTGGTTCGAACGAACTCCGACGACGAGCTGCGCAACGACCCACTGTTGGCCACCGGCGATGCCGTCGTATCCATCGACGCTGTCGACTCCGGCGGCTACGAGTCCAACGAAGATATTGAGTATCTCCAGAGATTGCAGAATCTCTACAAGCCTCTGGCGACTCTTCCTCCTCCATCGCCTTCGCCGCCACCGGTGGACGTATTCGATGATGATGACGACGATGTCGAGACCGTTCGCGCCATTTTCAAACGGTTTGCCGACTACGATATGAGAGGTTTAGGTACAATGACTGAGGGAGATCAGGCCACAAGTCCAGGCCCTGAGAGAGACATTGCTAATGGTTCAACATCTTCCGTAATTGTTGAAGGTGGTGAAACATGCCCTGTTTATCATGATCGTACTAATTCCACAGATTTCATGACTGGAAATACTGAAATGCAGCACTCTGGTCTTGCTGAGAGTTCTAATCCAGATGCCAGCACTGTATCCAGGTTGCCACGGAGAAGATCAAGTTTCCCACCGTTAGCGCAGGCTCTTTTTGATGCCCTTAAGAAGAATAGGTCTCTTCAGAAGTTTATTAGAAGCAAGATGATTGAGATTGAAGCAAAAATTGAGGAAAACAAGCAACTTAGGAACAATGTTAAAATCCTTAAGGACTTCCAAGCTTCATGCATAAGAAGAACAGGGAGTGCTTTATCGCTAAAAAAGGATCCTCGTGTCCTGTTAATATCAGCACAAAAGAGTGATAGTAAAAGAAAATCTCCAATGTGTTTTGGCCCACCAGACAATCGTCATGTTGCTAATTATAAGATGGTTTTAGAAAGATTTCCGCGTTCATTGGATCGAAAAAAATGGTCAAATGAGGAAAAGGAAAATCTTATGAAGGGAATTAAGCAACAATTCCAAGAATCGTTGGTAATAGCAATGAGTTCTGAAGTTCCACATGGAGATGGAAATTACATGGATAGCATAATGGAATATACTAACCAAGTTGATATTACACCCGAAATTATGAAAAAATATTTACCCGATGTTAATTGGGATAAGTTAGCTTCTACTCATGTTCCTGGCCGTACTGGTGCTGAATGTGAATCAAGGTGGTTGAATTGTGAAGATCCCTTGATCAACCATGGACCATGGACTAGTGAAGAGGATAGGTTGCTTTTGCTTCTTGTCCAACAAATGGGAATTAGGAACTGGTTCGATATTTCCAAATCCTTGGGCACGAACAGGACTCCATTTCAATGCTTGGCTCGATTTCAAAGGAGCTTGAATCCTTCGATGCTAAATAGGGAATGGACTAAAGAAGAAGATGCTCAACTCTGTTCTGCTGTAGCTATTTATGGAGAGAGTAATTGGCAAGCTGTGGCTTCTGTTTTAGAAAGGCGGACAGGAACCCAATGCTCAAATAGATGGAAGAAATCACTTTTTCCCGAGAGAAAAGGGAGTTATACTCAAGAGGAGGACAAGCGCTTGACAGTGGCAGTCATGCTTTTTGGTCGGAAATGGAATCAAATAGCTAGGTTTGTTCCTGGTCGGACCCAATGTCAATGTAGGGACAGATACGTCAATAGTTTGAACCCTTCTTTGAAATGGGGTGGATGGACTGACGAAGAGGATTCAAGATTGCAAGCTGCAATTGCTAAGCATGGATTCTGCTGGTCTAAGGTTGCTGAAGATATGCCCCCTCGTACTGATTCTCAATGCCGGAAGAGATTTAAGGTGTTATTTCCTGATCAAGCTTATTTGCTTCAAGAAGCAAGAAAGAAGCAAAAGTCTTTGATTGCTGGTAACTTTGTTGATCGAGAATCTGAACGCCCAAACCTTACACTGAATGATTTCCTTCCCTTACCTACATTATCTCCTCTTCCTTGTGATGCTGATGATGAGAATCTCCCTAGGAAGAGAAAGAGGAAGTCAAGCAATGAACACAAGAAATTCAGGTCCAGAAGACCCGCAAAAAAGACACGAACAAATCACAATGATGGAAAGGATATTGATGAGTCCAAGATTTTTAATGGAGATGTCAATATTCCCAAAAGAACAAGGTCCAAGAAAAACTCAAGAAATACTTTAGTTCATGCTAAGGAAGCTGAGAATACAAAACAAAATGCTGAGATCCAGGCTTGTAGTGGGAAACTAAGTAGAATCAAGGGCGCCGAAACATCAAAGAACAAACTAAAGAATAAAATGTTGAAACCTGAAAGCTTGTCTACTGTTGTTGAGTGTTCTGGAAGTCAAAATGAGGACAACACAACTCTTTCTTCCTTTCTACACATGAAGTTAAATAAGAGAGGGTTGAAATGCAACAAAAATAAGGGCGGGGCTGCCTCTGCATTTGCGACAAATGTTGTATCTAAGCAGGTTGATAATCAAAGCTCCTCTGCTGAGCAAGATGGCTTGTCGCAGTTGTGTGGTGCTGGTGGGGTTGAACATTTGGTTACGGTGCAAAACAACTCCGCTTCTGACAGGCTACTGAGAAAACCAGAGAATGTAAATAGGTTGACTGGTGGTGAGGATGACAACGAAGATATCACCCTTGATTGCCTTGTGGGAAACAAATCAAAAGAATGTAGTCAAGTGACTAAAGGACCTTCTGTTTTATCTTCTTCCAAATCAAAACATGCGTCTGTTTCGCTTCCTGAAGTGCATTGCACAGAAAAGGCAGCCATCACAGCTGATTGCACCGGGCAGTCGACACCAAATCTTGTTGAAGACCGATCCGTTTCACCTAGTAGTTTGGCTGAACCTACGACAGCCTTCAATGCAGAGGAAGAAGATGAACTGCTTGCTACCTTTATGCGAAATAAGTCTAAGGGAGCACGAAGAAAGGTGAAACGTAAAGAAGGTAATTGCTAA 3078 0.4428 MAPRADQDSLSSTDDDESDDEGLKEDLAALSRAFDMSGADSTAPPDPVLQVDFDDDLRGGVSTAPPAAAFTDLVVRTNSDDELRNDPLLATGDAVVSIDAVDSGGYESNEDIEYLQRLQNLYKPLATLPPPSPSPPPVDVFDDDDDDVETVRAIFKRFADYDMRGLGTMTEGDQATSPGPERDIANGSTSSVIVEGGETCPVYHDRTNSTDFMTGNTEMQHSGLAESSNPDASTVSRLPRRRSSFPPLAQALFDALKKNRSLQKFIRSKMIEIEAKIEENKQLRNNVKILKDFQASCIRRTGSALSLKKDPRVLLISAQKSDSKRKSPMCFGPPDNRHVANYKMVLERFPRSLDRKKWSNEEKENLMKGIKQQFQESLVIAMSSEVPHGDGNYMDSIMEYTNQVDITPEIMKKYLPDVNWDKLASTHVPGRTGAECESRWLNCEDPLINHGPWTSEEDRLLLLLVQQMGIRNWFDISKSLGTNRTPFQCLARFQRSLNPSMLNREWTKEEDAQLCSAVAIYGESNWQAVASVLERRTGTQCSNRWKKSLFPERKGSYTQEEDKRLTVAVMLFGRKWNQIARFVPGRTQCQCRDRYVNSLNPSLKWGGWTDEEDSRLQAAIAKHGFCWSKVAEDMPPRTDSQCRKRFKVLFPDQAYLLQEARKKQKSLIAGNFVDRESERPNLTLNDFLPLPTLSPLPCDADDENLPRKRKRKSSNEHKKFRSRRPAKKTRTNHNDGKDIDESKIFNGDVNIPKRTRSKKNSRNTLVHAKEAENTKQNAEIQACSGKLSRIKGAETSKNKLKNKMLKPESLSTVVECSGSQNEDNTTLSSFLHMKLNKRGLKCNKNKGGAASAFATNVVSKQVDNQSSSAEQDGLSQLCGAGGVEHLVTVQNNSASDRLLRKPENVNRLTGGEDDNEDITLDCLVGNKSKECSQVTKGPSVLSSSKSKHASVSLPEVHCTEKAAITADCTGQSTPNLVEDRSVSPSSLAEPTTAFNAEEEDELLATFMRNKSKGARRKVKRKEGNC* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2556 1025 Coils Coil 266 286 - -
Ahy5g2556 1025 MobiDBLite consensus disorder prediction 220 240 - -
Ahy5g2556 1025 MobiDBLite consensus disorder prediction 729 744 - -
Ahy5g2556 1025 SUPERFAMILY Homeodomain-like 579 652 IPR009057 -
Ahy5g2556 1025 SUPERFAMILY Homeodomain-like 500 595 IPR009057 -
Ahy5g2556 1025 SMART sant 502 551 IPR001005 -
Ahy5g2556 1025 SMART sant 354 446 IPR001005 -
Ahy5g2556 1025 SMART sant 604 652 IPR001005 -
Ahy5g2556 1025 SMART sant 449 499 IPR001005 -
Ahy5g2556 1025 SMART sant 553 601 IPR001005 -
Ahy5g2556 1025 SUPERFAMILY Homeodomain-like 425 494 IPR009057 -
Ahy5g2556 1025 MobiDBLite consensus disorder prediction 711 728 - -
Ahy5g2556 1025 ProSiteProfiles Myb-like domain profile. 445 497 IPR001005 -
Ahy5g2556 1025 CDD SANT 452 497 IPR001005 -
Ahy5g2556 1025 Pfam Myb-like DNA-binding domain 453 514 - -
Ahy5g2556 1025 MobiDBLite consensus disorder prediction 220 241 - -
Ahy5g2556 1025 MobiDBLite consensus disorder prediction 972 1000 - -
Ahy5g2556 1025 Gene3D - 551 605 - -
Ahy5g2556 1025 CDD SANT 505 549 IPR001005 -
Ahy5g2556 1025 MobiDBLite consensus disorder prediction 1 25 - -
Ahy5g2556 1025 MobiDBLite consensus disorder prediction 695 765 - -
Ahy5g2556 1025 MobiDBLite consensus disorder prediction 972 992 - -
Ahy5g2556 1025 CDD SANT 556 599 IPR001005 -
Ahy5g2556 1025 Gene3D - 354 446 - -
Ahy5g2556 1025 Gene3D - 606 649 - -
Ahy5g2556 1025 ProSiteProfiles Myb-like domain profile. 498 549 IPR001005 -
Ahy5g2556 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 506 553 IPR017930 -
Ahy5g2556 1025 Pfam Myb-like DNA-binding domain 355 442 IPR001005 -
Ahy5g2556 1025 Pfam Myb-like DNA-binding domain 554 597 IPR001005 -
Ahy5g2556 1025 Pfam Myb-like DNA-binding domain 607 649 IPR001005 -
Ahy5g2556 1025 CDD SANT 608 650 IPR001005 -
Ahy5g2556 1025 Gene3D - 447 496 - -
Ahy5g2556 1025 Gene3D - 497 548 - -
Ahy5g2556 1025 ProSiteProfiles Myb-like domain profile. 350 442 IPR001005 -
Ahy5g2556 1025 ProSiteProfiles Myb-like domain profile. 553 599 IPR001005 -
Ahy5g2556 1025 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 14 950 - -
Ahy5g2556 1025 ProSiteProfiles Myb-like domain profile. 600 650 IPR001005 -
Ahy5g2556 1025 CDD SANT 357 442 IPR001005 -
Ahy5g2556 1025 MobiDBLite consensus disorder prediction 35 54 - -
Ahy5g2556 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 554 594 IPR017930 -
Ahy5g2556 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 445 501 IPR017930 -
Ahy5g2556 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 600 654 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2556 Ahy-Chr5 101220040 101226155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2556 230 697 MYB-Related Transcription Factor Family AT3G18100 52.546 2.33e-174 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy5g2556 Myb_DNA-binding 3.30E-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2556 K09422 - gmx:100818474 890.567