Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2527 ATGGCTGTTGTAACAGAACAAGATATGAAATGGAGAAGAGAGAGGAACAAGTTGAGGCAGCAGCAAGTCCCTTCCATGACCCAAACCACAAGCTGCAAATCCACCATATCTTCTCTCATCCTCTCCTCTTTCTCCAATGAAACCGCCACAAACAAGAACAAGAGTACATTCAGGGGACTTGGTTGCACTGCTGCTTCTGCATCATCACAAGTAGTCTCAGTTCCTGCTGTGATTCGATCCTCTGCTGATTGGAAGAACACTAGGAAGAACAACAAGTGCAGAAGGAGGAACACTGAAAAAAGCAGCATAACATGTCACCATAAACATGCTTCTTCTTCTTCTTCTTTTCAGGATGTATGGTGTGGCCCTGGAATTGGATTTGCATCAGATCATGCTTCTGCTTCTGTGGATTGTGTGGTGGCAAGGAAGAATGCTTCTTCAAGAAGGAACCTTGATGCTGTTGAGAGAGCAATACATAGGGAAGAGCGTCCTCCGCCTTATTTGGGAAGACGCACCATGAACACAGGCTTCTCTTTCTTGGATGATGATCAAGGCATTTTCGTGACACGCCCTGGATCGGAGTCTTTCGCTGCCGGTAGATACTATCGCCACGTTCCGCATCCCTCCTCTGATGGTCTTGCTGAGATAATGATACTTCAAGGAAGACTATTAATGGGTGGAAGATTAAATTCACATGACCAATTTAGAGACTGGAGACTTGATGTTGATAATATGTCATATGAGCAATTGCTTGAGTTGGGTGAGAGAATTGGCCATGTGAACACTGGACTTAAAGAAGATGAGATGGGACACAACATAAGGAAGATTAAGCATGTAATTTCAAATAATCATTCAAAGCATCAAATAGACAAAAAGTGCAGCATTTGTCAGGAGGAGTATGAGGCTGATGATGAAATTGGGAGGCTAACTTGTGAACACAAGTATCACTTTCAGTGTATAAAACAATGGCTTGTCCATAAGAACTTCTGTCCTGTTTGTAAGCAAGAAGTTGTAGTTCGACACGGAGTGGCACAATTCTGA 1041 0.4323 MAVVTEQDMKWRRERNKLRQQQVPSMTQTTSCKSTISSLILSSFSNETATNKNKSTFRGLGCTAASASSQVVSVPAVIRSSADWKNTRKNNKCRRRNTEKSSITCHHKHASSSSSFQDVWCGPGIGFASDHASASVDCVVARKNASSRRNLDAVERAIHREERPPPYLGRRTMNTGFSFLDDDQGIFVTRPGSESFAAGRYYRHVPHPSSDGLAEIMILQGRLLMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGHNIRKIKHVISNNHSKHQIDKKCSICQEEYEADDEIGRLTCEHKYHFQCIKQWLVHKNFCPVCKQEVVVRHGVAQF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2527 346 CDD RING-H2_PA-TM-RING 293 334 - -
Ahy5g2527 346 SMART ring_2 293 333 IPR001841 -
Ahy5g2527 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 341 IPR045191 GO:0061630
Ahy5g2527 346 Pfam Ring finger domain 292 334 IPR001841 -
Ahy5g2527 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 341 IPR013083 -
Ahy5g2527 346 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 5 341 - -
Ahy5g2527 346 SUPERFAMILY RING/U-box 292 340 - -
Ahy5g2527 346 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2527 Ahy-Chr5 100701688 100705480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2527 7 248 C3H Transcription Factor Family AT1G73760 37.687 8.94e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2527 - - ahf:112751066 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2720 15 143799894 143803734 Ahy5g2527 5 100701688 100705480 hybridization