Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2502 ATGTTAGAACCTTTCTACTTGTTATGTGCATTATTCTCCGCCATATTCATGACATGTTATGCTGATTCATCACCAATTTGTGCTCCTTCTGATTGTGGTAATGAAGTTCCCATTAAGTACCCTTTCTGGAAACGTTCCGGCACCGTCGGAGAAGTTTGCGGTTATCCGGAGTTTGGTCTTGAATGTTCAAAAAAAGGCTACCCTATCCTCCAACTGAAAACTGACACATACTATGTTACAGACATAAACTATGTAAATCATTCAATCACACTTGTTGACATTGATGTGATGAATGATACATGTCCAAGGGCAAAGAACAACGTTTCCATAGGGAACATACCTTTGTCTTTCAGTAATTTGGATATGAACATCACTTTCTACTTCAATTGCAGTTCTCAGCCTTCAGTGGTTGGTGCCGTGCCTATCAAGTGTTTGATAAATGGTCAGGGGAAGAAGTCTTATGTGTTTGAGGTTGGAACGGATATTGGTCGAAGGACTTGGACTAACTCTTGTGATGCTGAGGTTATGGTGGCAGTGAAGCATGATCAGATCAATAGTGGTGACTTGATCAATGAGTTTGGTGCAGCTATGAGCAAAGGGTTTGTTCTTGATTGGAACAGAGCTGTGGATTGTGCTGAGTGCGAGCTTTCTGATGGGTATTGTGCATATAATGGAACTACTAGGCAGACCATGTGCATATGCAAAGATAGCATAATTGTTGCCGAAAGCTGTAAAAAAGCTGCAGGTAATCGCTGGACCAGACTAAAGAAAGTCATTATTGGTGCTACAACAGCTGCAGTAATTGCAGGATTGTTGAGTATTTGTTACTTTACATACAAGTTACCAAGATGGCGAGAAAAATATAGCTTTCTGACAAAAGGTAACCAAGATATTGAAACTTTCTTAAAAAATCATGGCGTGTTAAGTATAAAACGATATAAATTCTCTGATGTGAAGAAAATGACCAACTCCTTCAAAGTTAAACTAGGACAAGGTGGTTTTGGTGTTGTATACAAGGGAAAGTTATCCGATGGTTCTAATGTGGCAGTCAAAATGTTGAATCCATCCAAAGGAAATGGTAAAGAGTTTATCAATGAAGTAGCTAGCATTAGTAGAACTTCTCATGTTAATGTTGTCACCCTTTTTGGATTCTGCTTTGAAGGCCGCAAGAAAGTTCTTATTTATGAATTTATATCAAATGGTTCCCTTGACAAGTATATTTATAGAAAGGAAGGAGTTGAAACTACTACATTGTTGAGTTGGGATAAGCTGTATCAAATTGCCAAAGGGATAGCTAGGGGGTTAGAATACTTGCATAGAGGATGCAACACTCAAATTTTACATTTTGACATAAAGCCACATAATATTCTTTTGGATGAAAATTTTTGTCCTAAGATATCAGATTTTGGACTAGCAAAACTTTGTCCTGGGAAGGAAAGTCTTATTTCCATGTCAGATGCTAGAGGAACAATAGGGTATATAGCTCCAGAAGTATGGAATAGACATTTCGGCAAAGCTTCTCATAAATCTGATGTTTATAGTTATGGAATGATGCTTCTTGATATAGTGGGAGGAAAGAAGAACATTAATGTAGAAGGGAGTCAAACAAGTGAGATATATTTCCCTGATTGGATATACAAAAGGCTTGAACAAGGCACTCAATTAGGACCTGAAGATGGAGTGGTGGCAATAGAGGAAAATGAATTGGTTAAGAAAATGACGATTGTGGGTTTATGGTGTATTCAAACAATTCCAAATGATAGACCTACAATGAGTAAAGTTGTAGAAATGTTAGAAGGCAGCATAGATTCCATAAAAATGCCACCAAGACCTGCTCTGTCTTCTCCTGTAAGATCGATTGCAGAATCTTCTACTTTGTTAAATTAG 1887 0.3778 MLEPFYLLCALFSAIFMTCYADSSPICAPSDCGNEVPIKYPFWKRSGTVGEVCGYPEFGLECSKKGYPILQLKTDTYYVTDINYVNHSITLVDIDVMNDTCPRAKNNVSIGNIPLSFSNLDMNITFYFNCSSQPSVVGAVPIKCLINGQGKKSYVFEVGTDIGRRTWTNSCDAEVMVAVKHDQINSGDLINEFGAAMSKGFVLDWNRAVDCAECELSDGYCAYNGTTRQTMCICKDSIIVAESCKKAAGNRWTRLKKVIIGATTAAVIAGLLSICYFTYKLPRWREKYSFLTKGNQDIETFLKNHGVLSIKRYKFSDVKKMTNSFKVKLGQGGFGVVYKGKLSDGSNVAVKMLNPSKGNGKEFINEVASISRTSHVNVVTLFGFCFEGRKKVLIYEFISNGSLDKYIYRKEGVETTTLLSWDKLYQIAKGIARGLEYLHRGCNTQILHFDIKPHNILLDENFCPKISDFGLAKLCPGKESLISMSDARGTIGYIAPEVWNRHFGKASHKSDVYSYGMMLLDIVGGKKNINVEGSQTSEIYFPDWIYKRLEQGTQLGPEDGVVAIEENELVKKMTIVGLWCIQTIPNDRPTMSKVVEMLEGSIDSIKMPPRPALSSPVRSIAESSTLLN* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2502 628 SUPERFAMILY Protein kinase-like (PK-like) 304 599 IPR011009 -
Ahy5g2502 628 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Ahy5g2502 628 MobiDBLite consensus disorder prediction 609 628 - -
Ahy5g2502 628 ProSiteProfiles Protein kinase domain profile. 323 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy5g2502 628 Pfam Wall-associated receptor kinase galacturonan-binding 27 93 IPR025287 GO:0030247
Ahy5g2502 628 Pfam Wall-associated receptor kinase C-terminal 144 236 IPR032872 -
Ahy5g2502 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Ahy5g2502 628 Gene3D Transferase(Phosphotransferase) domain 1 398 612 - -
Ahy5g2502 628 PANTHER RUST RESISTANCE KINASE LR10-RELATED 30 625 IPR045874 GO:0004672
Ahy5g2502 628 PANTHER - 30 625 - -
Ahy5g2502 628 Pfam Protein kinase domain 326 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy5g2502 628 SMART serkin_6 323 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy5g2502 628 CDD STKc_IRAK 329 600 - -
Ahy5g2502 628 Gene3D Phosphorylase Kinase; domain 1 297 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2502 Ahy-Chr5 100046221 100049954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2502 27 626 Receptor kinase-like Gene Family AT5G38260 40.097 2.00e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ahy5g2502 Pkinase 5.90E-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2502 - - gmx:100796618 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2754 15 144768332 144771506 Ahy5g2502 5 100046221 100049954 hybridization
Ahy5g2502 5 100046221 100049954 Ahy13g2131 13 39829581 39833120 PCT
Ahy5g2502 5 100046221 100049954 Ahy3g1835 3 37882638 37886205 PCT