Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2462 ATGAAAGGTTCAAGTAGTGGTGCATTGGGAGCAAAAACAGCAAGAGCGTGTGATAGCTGCCTAAGAGTAAGAGCAAGGTGGTTCTGTGCGGCAGATGATGCTTTCCTCTGCCATGGCTGCGATAACTTGGTTCACTCGGCCAACCAGTTAGCCAGCCGCCATGAAAGGGTTAGGCTCCAAACTTCATCTTCCTCCGCCAAGATAACAACAACTGCATGGCATAGTGGCTTCACGCGCAAGGCAAGAACCCCGCGTCATCACAACAAGAGCACTTTCTTGATGCAGCAGCAACAAGATGCTGAGAAAGAAGAAGAAGCGGTTTTCAATAACTACCAGGGTTCCGTGTTTCTGGATCCTGTTGTGCCAGATCTTGGAAGCGAAGATATTTATGAGAGTGAGGAGCAGATTCTGTGCCGCGTGCCGGTGTTTCACCCTTTTGATGATGATTCTGTGCTTTGTAGTGTGCACAATAATGAAATAATGAAGAAGAAAAAGAAGAAGATGAAGAAGATGAACAATGATGATGGTGAAGAAGAAGGAGAAGGTGAAGTACCGTGCACGTTTGGATTGGAGAATTTCTCTGATCTTGCTGATGTAGAAAACTTGCTCCATATTGAGGATGATTCAACCATGATTAAGGTTAAGGATGAATTACAAGTTACTAATAATGATGATGATTGTAATCTGGAGTCCATTCTTGACTGGAATATTGACACGTCAGATCAATCAATGATGATGGCAGTAGTAGAACATGATCAAGAAGAGGAGGAAAATATTAATAAAGTGGAAATAATAAAGAAAGAGAAGTTTTTGAGGCTAAATTATGAAGAGGTTATTTCTGCTTGGGCAAGTCAAGGATCTCCATGGACTACAGGAAATCCACCTAACTTCAACTTTGATGATTGTTGGCCCCATTACATGGGTTCAAGTGGTGGCGTGGATAATAATGTTGCATGGTGTGATGGGGAGGAAGTAAGAAACATGAGATGGCATCAAATAGGGGGAGTTGATGATGGGGGGAGAGAAGCAAGAGTATCAAGGTACCGAGAAAAGAGAAGAACGCGTTTGTTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGCTCAATGCTGAGAAGAGACCAAGAATGAAGGGTCGTTTTGTGAAGAGGACATCTTCATCATCATCATCCTTTGTTGAAGGAGCCATTACTACTACTTAA 1200 0.4267 MKGSSSGALGAKTARACDSCLRVRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTSSSSAKITTTAWHSGFTRKARTPRHHNKSTFLMQQQQDAEKEEEAVFNNYQGSVFLDPVVPDLGSEDIYESEEQILCRVPVFHPFDDDSVLCSVHNNEIMKKKKKKMKKMNNDDGEEEGEGEVPCTFGLENFSDLADVENLLHIEDDSTMIKVKDELQVTNNDDDCNLESILDWNIDTSDQSMMMAVVEHDQEEEENINKVEIIKKEKFLRLNYEEVISAWASQGSPWTTGNPPNFNFDDCWPHYMGSSGGVDNNVAWCDGEEVRNMRWHQIGGVDDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSSSSSSFVEGAITTT* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2462 399 CDD Bbox1_BBX-like 16 59 - -
Ahy5g2462 399 Pfam B-box zinc finger 14 57 IPR000315 GO:0008270
Ahy5g2462 399 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Ahy5g2462 399 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 389 - -
Ahy5g2462 399 Pfam CCT motif 341 383 IPR010402 GO:0005515
Ahy5g2462 399 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 389 - -
Ahy5g2462 399 SMART bboxneu5 12 59 IPR000315 GO:0008270
Ahy5g2462 399 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2462 Ahy-Chr5 99250718 99252871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2462 1 383 C2C2-CO-like Transcription Factor Family AT1G25440 41.801 6.00e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ahy5g2462 zf-B_box 1.80E-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2462 - - aip:107644315 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2806 15 145869239 145871441 Ahy5g2462 5 99250718 99252871 hybridization
Ahy13g2097 13 38661258 38663168 Ahy5g2462 5 99250718 99252871 PCT
Ahy3g1802 3 36438488 36440390 Ahy5g2462 5 99250718 99252871 PCT
Ahy5g2462 5 99250718 99252871 Ahy13g2097 13 38661258 38663168 PCT
Ahy5g2462 5 99250718 99252871 Ahy3g1802 3 36438488 36440390 PCT