Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2460 ATGCAATCACTTCCATCAGAGTCCCAAACAGCACAGTCCAACCTTTTCCATCATGCTAAGATCATTAGATTAAAAAAAAAGGGAATGAAATGCAAGAGAGGAACAGAAGGAAATTTGAACATTATGAGGAGAATTAGAATAATTTATAGTGACCCATATGCAACAGATTGTTCAAGCGAAGAAGATGACAATTTTTTGAGCAATCACTATGAACAACATGGTCCTAAGAGATTCATCAGAGAAATCTTGGTTCCATGCATGCCAACCGAATCGTATGAAGTGGATGATGATGATTCTTTACAACAAGGTATCAGCATTGACAAAATCAAACCATGTCTTAACCTTTTGCGAAACCATAGGAGCCGGAGATCATCCAGCAAGTACAGAGGTGTTCAAAGAAGGAAATGGGGGAAGTATGTGGCAGAAATCCGAGACCCCATCCGAGGCGTGCGAGTGTGGCTTGGTACTTTCAATACGGAGGAAGAAGCTGCCATCGCTTATGAGAAGAAGAGAATTGAATTTGTGAACTCATTGCTGGCTTTGAGGAGAATGGTTGGTGTATTGGACTTAGAAGATGGCAATCAAGTGTTGTCTCATCCATCCCCAGCATCCGTGCTTGATGTCGCGGCGACAAGAGCATCATCTGATAATGATAGCAATGGTCCAGTTGTTGAAGGAAAGGACAATGTGGAAACAAGTGCTATTGAAGGTGTAATGGAACCTGTTCATGCGGAAGATCATCATTCATTTCAGCATTTGCTTGAGGAGTCAATTGTGCAATCACTGCTTGGGTATGAATTTGATAGTTTCTTGGTCAATGACAATGGTGGCTGTGCTATGTGGGATGTGAAAGATGGTGAAGGTAGCAGCACTCTTCCACATATTGAAACTGCTTTTGATGATTCAGAGTTGACTTGGTTTGATGAAACTCTGAATTTGTAA 942 0.413 MQSLPSESQTAQSNLFHHAKIIRLKKKGMKCKRGTEGNLNIMRRIRIIYSDPYATDCSSEEDDNFLSNHYEQHGPKRFIREILVPCMPTESYEVDDDDSLQQGISIDKIKPCLNLLRNHRSRRSSSKYRGVQRRKWGKYVAEIRDPIRGVRVWLGTFNTEEEAAIAYEKKRIEFVNSLLALRRMVGVLDLEDGNQVLSHPSPASVLDVAATRASSDNDSNGPVVEGKDNVETSAIEGVMEPVHAEDHHSFQHLLEESIVQSLLGYEFDSFLVNDNGGCAMWDVKDGEGSSTLPHIETAFDDSELTWFDETLNL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2460 313 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 312 - -
Ahy5g2460 313 SUPERFAMILY DNA-binding domain 126 176 IPR016177 GO:0003677
Ahy5g2460 313 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Ahy5g2460 313 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Ahy5g2460 313 ProSiteProfiles AP2/ERF domain profile. 127 191 IPR001471 GO:0003700|GO:0006355
Ahy5g2460 313 PANTHER - 27 312 - -
Ahy5g2460 313 Gene3D AP2/ERF domain 126 178 IPR036955 GO:0003700|GO:0006355
Ahy5g2460 313 SMART rav1_2 127 181 IPR001471 GO:0003700|GO:0006355
Ahy5g2460 313 CDD AP2 127 174 IPR001471 GO:0003700|GO:0006355
Ahy5g2460 313 Pfam AP2 domain 126 174 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2460 Ahy-Chr5 99190491 99192749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2460 30 174 AP2-EREBP Transcription Factor Family AT1G68550 35.849 2.69e-22 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy5g2460 AP2 1.60E-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2460 - - aip:107642108 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2809 15 145921132 145922744 Ahy5g2460 5 99190491 99192749 hybridization