Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2401 ATGGCATTTTCAACCCCGGAAGGCGGATCGATTAGTACATTGATCAATCCAACCCAAGGCAATGAACAATTCAGTGTGGGTGAAGTCGACGAAATTACCGACGTCGTTGTGACTAGAAAGGATGAGTTGGACTCGGGACACGAGTTGTCGGATCATAGTGGGGTCGGTGAAGAGAAATTTCCAGTCATAGGAATGAGTTTTGGTTCGTTGTCTCTCGCACAGAAATTTTATGCAAACTATGCAAAGAAAGTTGGGCTCGTTACTAAAATCAGGAACATGAATTTCAACAAAACGCGAAAGAAATCAAAGATACTGGTTAATCAATCTATTTACTGCACGCGAGAAGGTTATCGAGAGTGTAGGGTGAACGCAGCAACTCGAGCAAACAGAATTATAGCCATGACATGCAGAGCAACAATGTATGTTATGCTAGACAAGGAGAAGGAAAGTTGGGTTGTGTCTAGATTAGAATTGAGGCATTCTCATCCCTGTTCGGCTAAGAAAGCTGTCCACTATCATGAGTACCAAGAGTTGACCATGCATGCTAAGTGCGTCATTACGAATAACGACGAGGTTGGAATAAGACCCAATAAGACGTATCTAGCACTGGTAAACAAGGGGATGATGAATTATTTTGTCCGAATGAAGGAAATCAATCCCAACTTCTTTTATGCCATAGATGTTGACGATGCTAATAAATTTAGGAACGCACTATGGGTAGATGCAAGGTGCAGGGTTTCGTATGAATATTACGGAGATGTGGTGTCGTTCGACACCACTTACAGAAGAAACATGTCTGTATACTTATTGTTATCGTATACTTATGGTCTGCCGTTTGCATCCTTTGTCGGTGTAAACCACCATGGGAAGTCTACTCTTTTTGGCTATGCTTTACTTGGGAGCGAGGAGATCCCTAACCTTTATGCAAATCGACGTAAGTGGGTTCCAATATTCTTTAAGAGTGAATTTTGGGCAAGCATGAGGAGTACACAGCGTAGTGAAAGTATGCACGTATTTTATGGTGGATTTCTGCATTGCAAGAGTGGGTTGGTTCGGTTCGTTCATGAATACGACAATGTGCTTGGAAACAAGGAGCAAAAAGAGCTGGAAGATGATGCTGCATACTCGAAAGCAGTCATCCCATGTATAGGGAGCACGAGCATTGAGAGATAG 1173 0.4254 MAFSTPEGGSISTLINPTQGNEQFSVGEVDEITDVVVTRKDELDSGHELSDHSGVGEEKFPVIGMSFGSLSLAQKFYANYAKKVGLVTKIRNMNFNKTRKKSKILVNQSIYCTREGYRECRVNAATRANRIIAMTCRATMYVMLDKEKESWVVSRLELRHSHPCSAKKAVHYHEYQELTMHAKCVITNNDEVGIRPNKTYLALVNKGMMNYFVRMKEINPNFFYAIDVDDANKFRNALWVDARCRVSYEYYGDVVSFDTTYRRNMSVYLLLSYTYGLPFASFVGVNHHGKSTLFGYALLGSEEIPNLYANRRKWVPIFFKSEFWASMRSTQRSESMHVFYGGFLHCKSGLVRFVHEYDNVLGNKEQKELEDDAAYSKAVIPCIGSTSIER* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2401 390 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 54 302 IPR031052 GO:0006355
Ahy5g2401 390 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 302 374 IPR031052 GO:0006355
Ahy5g2401 390 Pfam FAR1 DNA-binding domain 75 164 IPR004330 -
Ahy5g2401 390 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 54 302 - -
Ahy5g2401 390 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 302 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2401 Ahy-Chr5 97872910 97875892 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy5g2401 FAR1 3.90E-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2401 - - ahf:112730161 468.388