Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2398 ATGGTGTCGATTAATGGGATGGAGCAGAACAACGTGATCGCACCGTTCGTTATAAAGACATATCACATGGTCAACGATCCGAGCACCGATTACCTTATAGCATGGGGCCCAGCGAACAACAGCTTCATCGTCGTCGACCCTCTCGACTTCTCTCAGTCTCTACTCCCTGCCTTCTTCAAGCACAACAACTTCTCCAGCTTTGTTCGCCAACTCAACACCTATGGTTTCAGAAAGGTGGATCCAGATAAGTGGGAGTTTGCAAACGAGTGGTTTCTGAGAGGGCAGAAGCACTTGCTGAAGAATATAGTTAGGAGGAAGCACGGCACGAGGAGCTATAATTCTTTGCATTTCAACAACCACCACCACGGTGGCAAGCAGCAGATTTTAGCGGCGGAGGAGCTCGACGATGAAGCCATGATGGTGGAGATAGCGAGGCTGAAGGAGGAGCAGAAGGCTTTGGAACAAGAGCTTCAAGGGATGAACAAGAGGTTGGAGACAACCGAGAAGAGACCACAGCAAATGATGGCTTTTCTATGCAAGGTCGTCGAGGATCCCGAGGTTCTATCCAGGGTTCTTCTTGAGAGGGAGACCAGGCAAATCGCCGACAAGAGGCGCCGCCTTATCACGGCTGCGACCTCCTCGTCTTCGTCTTCTGGTGTTGCCGTCAAGACGGAACTCGAGGAGGAGGAACCAACTGTCGGGAATATAATATCTTCTTCGCCGGAAACCGGCTTCGAAATTGATAATTTTTGCCACGTGGCGTCGCCGTCTCCGCCGCAGGAGGCGGCGCCGGTGGCCATGGGGTGGTTGGGGCAGCCGCGGCCGAGGATTGGTCATCACTACCAACAGCAGGGGCATAATGGATATAGAAGTTATAATAACAATTATAATTATAGTTCCGCCGCCACACCAAAGCCGTTGACGGTGGTTCCTCCGACGGCGCCGCCGCAGGGTAATGGCACTGGTGGAGGTAAAGGTCACGTGAACTTTTTTAGTGAAATGGCGGCGGAGAATAGTCCACGGCCACCTTATCCGTTTTCACTATTAGAAGGTGGATTCTAA 1062 0.5188 MVSINGMEQNNVIAPFVIKTYHMVNDPSTDYLIAWGPANNSFIVVDPLDFSQSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRRKHGTRSYNSLHFNNHHHGGKQQILAAEELDDEAMMVEIARLKEEQKALEQELQGMNKRLETTEKRPQQMMAFLCKVVEDPEVLSRVLLERETRQIADKRRRLITAATSSSSSSGVAVKTELEEEEPTVGNIISSSPETGFEIDNFCHVASPSPPQEAAPVAMGWLGQPRPRIGHHYQQQGHNGYRSYNNNYNYSSAATPKPLTVVPPTAPPQGNGTGGGKGHVNFFSEMAAENSPRPPYPFSLLEGGF* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2398 353 Gene3D - 8 106 IPR036388 -
Ahy5g2398 353 Coils Coil 136 170 - -
Ahy5g2398 353 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 14 347 - -
Ahy5g2398 353 SUPERFAMILY "Winged helix" DNA-binding domain 13 105 IPR036390 -
Ahy5g2398 353 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy5g2398 353 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy5g2398 353 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy5g2398 353 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy5g2398 353 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy5g2398 353 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 347 IPR027725 -
Ahy5g2398 353 MobiDBLite consensus disorder prediction 219 238 - -
Ahy5g2398 353 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2398 Ahy-Chr5 97760878 97762347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2398 12 215 HSF AT3G24520 62.981 9.53e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ahy5g2398 HSF_DNA-bind 5.00E-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2398 K09419 - gmx:100794896 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2882 15 148011658 148013126 Ahy5g2398 5 97760878 97762347 hybridization