Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2359 ATGAATAGAGGAGTTGTTCATGGGTCGCCGGTGCAACAAATAATGGCGGCCGGAAACCCTAATTGGTGGAACATCAATAGCATGAGGCCTCCACCTCTTCCACAAGCTCCTCCTTTCTTGTCTACAACTCCTAATTCTTCAAACTTTCTCACCCAATATTCTTCTTCTTCTTCCTCTCTTCCTTTGCCTCCTTCTTGGCATGAAAATCAAGAGCTTCCTGAGTCATGGAGCCAGCTACTCATGGGTGGACTTGTGGGTGAAGAAGATCATCATCAAATGCTAAGTCATCAAGGTGCAAATAACAATGCTTCTCTTGTTGATGTTAAGCAAGAAAGCTCAGTTAACAGCTATGTATATGGCCATGGTGGTGCAAATGAAGAACTTCAGCCATCAAAGACTGCATCTTGGTCTCCAAATTCATGTGTCACAAGCTTCAGCAGCAACATGCTTGATTTTTCAAGCAATAATAATAGTGATCATAAGACTAATATTGATGCAAGGCATCCACCACCACCACCACCAGATCGATCATCTGAGTGTAACAGCAGTGGAAGTGGTGGGGCAGTGAAGAAAGCTAGGGTTCAACCTTCCACAACTACTCAATCCACTTTCAAGGTCAGGAAGGAGAAGTTAGGTGACAGAATTACTGCACTTCATCAGCTGGTTTCCCCATTTGGGAAGACTGACACAGCCTCAGTGTTGTTAGAAGCTATCGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGTTTACCATACTTGAGCAATGGATCAGGGAACACAAGGCATCAACAACATTCTGTTCATCAGGGAGAGAAAAATTGTTTATTCCCTGAAGACCCCGGTCAGCTACTGCATGAAAACTGCTTGAAGAGGAAAGCACCTACTAGTGAACAGGATTCTAAAGAAGAGACTAAGAAGGACCTAAGGAGTAGAGGGTTGTGTTTGGTTCCGGTTTCATGCACACTTCAAGTTGGAAGTGACAATGGTGCTGATTATTGGGCTCCAGCACTTGGTGGCGGTTTTCGGTAG 1038 0.4432 MNRGVVHGSPVQQIMAAGNPNWWNINSMRPPPLPQAPPFLSTTPNSSNFLTQYSSSSSSLPLPPSWHENQELPESWSQLLMGGLVGEEDHHQMLSHQGANNNASLVDVKQESSVNSYVYGHGGANEELQPSKTASWSPNSCVTSFSSNMLDFSSNNNSDHKTNIDARHPPPPPPDRSSECNSSGSGGAVKKARVQPSTTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLSNGSGNTRHQQHSVHQGEKNCLFPEDPGQLLHENCLKRKAPTSEQDSKEETKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGFR* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2359 345 PANTHER OS05G0228400 PROTEIN 17 331 - -
Ahy5g2359 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 256 IPR036638 GO:0046983
Ahy5g2359 345 CDD bHLH_AtbHLH_like 203 252 IPR045239 -
Ahy5g2359 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Ahy5g2359 345 MobiDBLite consensus disorder prediction 152 204 - -
Ahy5g2359 345 Gene3D - 200 257 IPR036638 GO:0046983
Ahy5g2359 345 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2359 Ahy-Chr5 96980909 96986285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2359 1 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 46.218 3.87e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2359 - - gmx:100786555 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2912 15 148803551 148809149 Ahy5g2359 5 96980909 96986285 hybridization
Ahy13g2035 13 36760353 36764088 Ahy5g2359 5 96980909 96986285 PCT
Ahy3g1751 3 34502720 34506717 Ahy5g2359 5 96980909 96986285 PCT
Ahy5g2359 5 96980909 96986285 Ahy13g2035 13 36760353 36764088 PCT
Ahy5g2359 5 96980909 96986285 Ahy3g1751 3 34502720 34506717 PCT