Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2357 ATGTCTGTGCCATTAGAGCAAGACTATGTAGTAGGCTTACCTGAGCTTCCTTCAATGGAAACCACAGAAAAAACCCCTCAAAAAACAACAAAAACCAGTGGTAGCTTCTTGAACCTTAAGGCCACTGAACTTAGACTTGGCTTGCCAGGTTCAGAGTCACCAGAAAAAGATGAAGATGGTGGTGTGTGTTCTGGGAAGTTGAATCTCTCTGGAAATGGTGGATCAGAAATGGGTATTGGTAAAGATGGTAACTTGTTCACTCCTCCAAGAAAAAGAGAACAAGCATCTGTTATGAAAGAGTCAACAAAGCCACTCAGTCAGAACCACAAGCCTCATATATCTTCTGCTACTGCTGCAAAAGAACAGGTAGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCAACTTCTTTGATGAATGATGAAGTTGATGCATCAGAAGCCAACTCTGGTAATTGCCTTTATGTCAAAGTCAGCAAGGATGGTGCTCCATTCTTGAGGAAAGTTGATCTCAAAAACTTTGATTCTTATAGGGATCTCTCTTCAGCCCTCAACAACATGTTTACTTGCTTTACAATCAGTCAATGTGGTACTCATGGAGTTTCTAGTAGAGACAAGTTGAGTGAAAGTAAGTTGATGGATCTGCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTAATTCTTGCAAGAGACTGAGGATAATGAAGAGTTCGGAAGCTATTGGACTAGCACCAAGAGCCATGGAAAAGTGCAAAAGTCGCAACAAGCTAGCACAATATATATAA 849 0.4146 MSVPLEQDYVVGLPELPSMETTEKTPQKTTKTSGSFLNLKATELRLGLPGSESPEKDEDGGVCSGKLNLSGNGGSEMGIGKDGNLFTPPRKREQASVMKESTKPLSQNHKPHISSATAAKEQVVGWPPIRSFRKNSMATSLMNDEVDASEANSGNCLYVKVSKDGAPFLRKVDLKNFDSYRDLSSALNNMFTCFTISQCGTHGVSSRDKLSESKLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTNSCKRLRIMKSSEAIGLAPRAMEKCKSRNKLAQYI* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2357 282 MobiDBLite consensus disorder prediction 100 115 - -
Ahy5g2357 282 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 64 269 IPR003311 GO:0005634|GO:0006355
Ahy5g2357 282 SUPERFAMILY CAD & PB1 domains 150 257 - -
Ahy5g2357 282 MobiDBLite consensus disorder prediction 20 38 - -
Ahy5g2357 282 ProSiteProfiles PB1 domain profile. 156 258 IPR000270 GO:0005515
Ahy5g2357 282 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 56 IPR003311 GO:0005634|GO:0006355
Ahy5g2357 282 MobiDBLite consensus disorder prediction 1 38 - -
Ahy5g2357 282 MobiDBLite consensus disorder prediction 100 120 - -
Ahy5g2357 282 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 64 269 - -
Ahy5g2357 282 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 17 56 - -
Ahy5g2357 282 Pfam AUX/IAA family 42 267 IPR033389 -
Ahy5g2357 282 Gene3D - 150 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2357 Ahy-Chr5 96912203 96917180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2357 158 274 B3 DNA Binding Superfamily AT1G30330 29.915 5.58e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ahy5g2357 AUX_IAA 2.90E-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2357 K14484 - gmx:100803754 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2913 15 148884249 148889318 Ahy5g2357 5 96912203 96917180 hybridization
Ahy13g2029 13 36395083 36397275 Ahy5g2357 5 96912203 96917180 PCT
Ahy3g1748 3 34350830 34353095 Ahy5g2357 5 96912203 96917180 PCT
Ahy5g2357 5 96912203 96917180 Ahy13g2029 13 36395083 36397275 PCT
Ahy5g2357 5 96912203 96917180 Ahy3g1748 3 34350830 34353095 PCT