Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2346 ATGAAGAATATTAATAATAATGATAATAATAAACATGGTTCTATTATTACCCTCTTATTATTAGTTCTAATTTCAATGTTAATCCAGCATGTTAGAGCAATAAATCCTTCTTCTTCATCATCAGGAGATGCTGTGTCCAATTTCCAACCAAGCCTTGTTGTTGTGATAGGAATCCTTGGCCTAATGTTTTCACTAACATTTGTTCTTCTTGTTTTTGCCAAATTTTGCCAAAGAGGAGCACTTGTCCCTCTTCTCCAAACAGAGAATCAAGAAAACCAGTTGTTATCAAGGTCTAGAAGATTCTCAGGAATTGATAAGAATGTTATTGAGTCATTACCCTTCTTCAGATTCTCATCCCTAAAAGGATCAAAGGAAGGTTTGGAGTGTTCTGTTTGCTTATCGAAATTCGAAGATGTCGAAATCCTTAGGCTCTTGCCAAAATGTAAGCATGCTTTTCACATTGATTGCATTGATCACTGGCTTGAGAAACACGCAAGCTGCCCTCTTTGCAGGCACAAGGTGAATCCGGCCGACGAGTCGATTTTCGCCTATTCAAACAGCTTAAGGAGGCTTGTTATCAATAATTCGGCCGCGGACGAAGACTCCAACATGGAGCTCTTCGTCCAAAGAGAGGAGGAAGAAGAAGGAGGAGAAGCAGAGCGACGCGGCTCAACAAGATTTAGTATTGGAAGTATTAGTCTCCGGAGATTATTTTCGAAGGATGTTAAGGAAGAAGAGTTGCCTATACAGAACAGAACCGATTGCAAAAACAAGGAGTACCATAAACACAAACACCGGATTACTGTCTCCGATGTTGTGTTTAAGAATCGGTGGAGCAATGTTAGCTCTTCAGACATAATGTTCTTGAACTCCGAGATGCTTAACGAGGTTTCGAGTTGCCGGTTCGACAACCAGAATGCAAATGATCAAGGAATCTTGAACCTTAAGGAAGAGATGGAGAGGAAAATTTCATTTGAGAGCAAAATTGGTGCAATAAACAAGATTAGTAACTCAAATTCAGATAAGGCTCCTTCTTCTTCTTCTTCTTCTACTTCTATAAAGCATTTGATGAATGAACATAGTGAGAAAAGGTCAATGTCAGAAATCATAGGAGTTTCAAGATTTGGTGAAATAGGAATGATGATGAAACAACAAAACAGTGCATTTAATAAGGATTCTTCTTCTTTGATTGATGAGAACAATAACATGAAAGAAGAAAGGATGAGGCAGCTTTGGTTTCCAATTGCAAGAAGAACAGTTCAATGGTTTGTGAATAGAGAAACAAGGTCTCATCATAAGAATAATCAAAAGACATTAGATGTATAG 1326 0.3808 MKNINNNDNNKHGSIITLLLLVLISMLIQHVRAINPSSSSSGDAVSNFQPSLVVVIGILGLMFSLTFVLLVFAKFCQRGALVPLLQTENQENQLLSRSRRFSGIDKNVIESLPFFRFSSLKGSKEGLECSVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHASCPLCRHKVNPADESIFAYSNSLRRLVINNSAADEDSNMELFVQREEEEEGGEAERRGSTRFSIGSISLRRLFSKDVKEEELPIQNRTDCKNKEYHKHKHRITVSDVVFKNRWSNVSSSDIMFLNSEMLNEVSSCRFDNQNANDQGILNLKEEMERKISFESKIGAINKISNSNSDKAPSSSSSSTSIKHLMNEHSEKRSMSEIIGVSRFGEIGMMMKQQNSAFNKDSSSLIDENNNMKEERMRQLWFPIARRTVQWFVNRETRSHHKNNQKTLDV* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2346 441 SUPERFAMILY RING/U-box 108 177 - -
Ahy5g2346 441 SMART ring_2 129 170 IPR001841 -
Ahy5g2346 441 CDD RING-H2_PA-TM-RING 128 171 - -
Ahy5g2346 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 180 IPR013083 -
Ahy5g2346 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 436 - -
Ahy5g2346 441 Pfam Ring finger domain 128 171 IPR001841 -
Ahy5g2346 441 MobiDBLite consensus disorder prediction 335 355 - -
Ahy5g2346 441 MobiDBLite consensus disorder prediction 335 364 - -
Ahy5g2346 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 436 - -
Ahy5g2346 441 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2346 Ahy-Chr5 96706629 96708263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2346 19 441 C3H Transcription Factor Family AT4G28890 46.833 4.36e-109 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2346 K10664 - gmx:100803207 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2922 15 149124705 149126225 Ahy5g2346 5 96706629 96708263 hybridization