Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2340 ATGGGAGTAGAGCCACGAACACCAAGCTCTGAAATGGAAACAGAAACAGTAGAAACTGGAAGAAGCACTGCCACATGTGCTTCACCACCATCAACACCAACTCTCACATCGAGCAAGAAGCGATCAAGGCAAAGCAATAAAAATGACAATGACAGGAATGACACCACTAACACCAAGCACCCTGTATACAGAGGGGTCAGAATGCGCACGTGGGGAAAATGGGTCTCCGAAATTCGGGAGCCACGCAAAAAGAGCCGCATCTGGCTCGGAACCTTCGCCACCGCCGACATGGCAGCGCGTGCACACGACGCCGCCGCTCTCACCATCAAAGGCTCCTCCGCCATCCTCAACTTCCCCGAACTCGCACCCTCTCTCCCCCGCCCCGCCTCCAACTCCCCCCGCGACGTCCAGGCAGCCGCCGCCAAAGCCGCCGCAATGATTCCCCCTCCTCCTACTCCTACTCCTACTCCTCCTCCACCGCCGGAGGATGAATCCTCTTCCTCTTCCACCACCACCACCACTACCACCTCCGAGGATGAGGAGCTTGGCGAAATCGTTGAGCTTCCTCCGCTTGGAAACAGCTTCGAAGTAGCTGAAGTAGATCCGAGTGGGATCAACGATCTTGATCAGTTGGTGTTCTTCGATCCGTTTGACGGTAACTGTTACCCTTGGAATCAGGGAAGCATTTATGATGATCATGATCATGATTGTTATGGCTGCTTCATTAATCATAACAATAATAATAACAGCAGCGACATCATGATGTCAATGCTGCTCGAGTCAGATTCTGTTCTTCCTTCTTCTCCTTCTAATCTTTCTATTTCTTCTTCTTCTTCTTTTTCTTCTTCCCTTCAATGTTCTCTCTGGCAACACTAA 876 0.5126 MGVEPRTPSSEMETETVETGRSTATCASPPSTPTLTSSKKRSRQSNKNDNDRNDTTNTKHPVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFATADMAARAHDAAALTIKGSSAILNFPELAPSLPRPASNSPRDVQAAAAKAAAMIPPPPTPTPTPPPPPEDESSSSSTTTTTTTSEDEELGEIVELPPLGNSFEVAEVDPSGINDLDQLVFFDPFDGNCYPWNQGSIYDDHDHDCYGCFINHNNNNNSSDIMMSMLLESDSVLPSSPSNLSISSSSSFSSSLQCSLWQH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2340 291 MobiDBLite consensus disorder prediction 126 185 - -
Ahy5g2340 291 MobiDBLite consensus disorder prediction 165 179 - -
Ahy5g2340 291 MobiDBLite consensus disorder prediction 9 41 - -
Ahy5g2340 291 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 245 - -
Ahy5g2340 291 MobiDBLite consensus disorder prediction 146 164 - -
Ahy5g2340 291 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Ahy5g2340 291 MobiDBLite consensus disorder prediction 42 58 - -
Ahy5g2340 291 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Ahy5g2340 291 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Ahy5g2340 291 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Ahy5g2340 291 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Ahy5g2340 291 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Ahy5g2340 291 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 25 245 - -
Ahy5g2340 291 MobiDBLite consensus disorder prediction 1 64 - -
Ahy5g2340 291 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Ahy5g2340 291 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2340 Ahy-Chr5 96533480 96534983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2340 36 251 AP2-EREBP Transcription Factor Family AT5G11590 51.131 2.18e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy5g2340 AP2 2.30E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2340 K09286 - aip:107641289 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2932 15 149326243 149327383 Ahy5g2340 5 96533480 96534983 hybridization
Ahy13g2009 13 35944340 35945758 Ahy5g2340 5 96533480 96534983 PCT
Ahy3g1727 3 33771760 33773113 Ahy5g2340 5 96533480 96534983 PCT
Ahy5g2340 5 96533480 96534983 Ahy13g2009 13 35944340 35945758 PCT
Ahy5g2340 5 96533480 96534983 Ahy3g1727 3 33771760 33773113 PCT