Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2282 ATGAATAATAATAAGATAAGCAACTTGAGCTCCGTGAGTAGCTCCGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGTGTGGAGGATCCAAGCAGTGCCCCGGTTGCGGCCACAAGTTTGAATCCAAACCGGATTGGCTAGGTTTACCAGCAGGAGTGAAGTTTGATCCAACAGATCAAGAACTAATAGAGCATCTTGAAGCCAAAGTGGAGTCAAAGAACATGAAATCACACCCTTTGATAGATGAATTCATTCCCACCATTGAAGGTGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGATTAAGTAAACACTTCTTCCATAGGCCTTCAAAGGCATACACAACAGGAACAAGAAAGAGGAGAAAGATTCAAAATGAGTGTGACTTGCAAGGTGGAGAAACAAGGTGGCATAAGACCGGTAAAACAAGACCGGTCATGGTTAACGGAAAACAGAAGGGTTGCAAGAAGATTTTGGTACTCTACACTAACTTCGGCAAGAATCGGAAGCCGGAAAAGACGAATTGGGTGATGCATCAATACCATTTGGGGCAGCATGAGGAGGAGAAAGAAGGAGAGCTTGTTGTGTCCAAGATATTCTACCAAACTCAGCCTAGGCAGTGTAATTGGTCGTCCGATCGGAGCGCCACCACCATCATTGCTACGGCCGAAGGGAGTGGAGAGCCACTACAAAATAGTAGAAGAGATAGCGGAAGTGGAAGTTGTTCTTCTAAGGAAATTAATATCGGTCATAGGGATGAGATGTCTGCTGTGGTTGGAGTTACTAATACTCCAATCACGAGCTTTGCTCATCCCTTGGACATTCATCATCACCTCAAATCGGATCATTTTAGCTTCATCCCATTTAGGAAAAGCTTTGATGAGGTTGGAATAGGAGAGGCTTCAACAGCAAGAGAAGTTCAAGCATCAGGGTCATGTGATGAAGTAGTACATGAACATGTAAATCATCATCATCATCAACAACAACAACAACATCATCATCATCATCATCAAATTGCAACATCGGCATTCCATATAAGTAGGCCTTCACATCCAATCTCTACCTTGATATCTCCACCACCACTTCACCACACATCCATCATCTTAGACGATAATTCCTACCAAGTCTCCAGAATAATGCTCCAAAATGAACATTTCCAGCAACAACAACAACAACATCAACAGCATCATCATAAAATTGGAGCAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCTTCTGATATCAAAGAGGAGTCATCCATCACAAACCCACAAGAAGCTGAATGGTTGAAATACTCTTCCTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1383 0.4346 MNNNKISNLSSVSSSDLIDAKLEEHQLCGGSKQCPGCGHKFESKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSSDRSATTIIATAEGSGEPLQNSRRDSGSGSCSSKEINIGHRDEMSAVVGVTNTPITSFAHPLDIHHHLKSDHFSFIPFRKSFDEVGIGEASTAREVQASGSCDEVVHEHVNHHHHQQQQQHHHHHHQIATSAFHISRPSHPISTLISPPPLHHTSIILDDNSYQVSRIMLQNEHFQQQQQQHQQHHHKIGARSASGLEELIMGCTSSDIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2282 460 MobiDBLite consensus disorder prediction 231 257 - -
Ahy5g2282 460 Pfam No apical meristem (NAM) protein 51 192 IPR003441 GO:0003677|GO:0006355
Ahy5g2282 460 Gene3D NAC domain 59 215 IPR036093 GO:0003677|GO:0006355
Ahy5g2282 460 SUPERFAMILY NAC domain 45 211 IPR036093 GO:0003677|GO:0006355
Ahy5g2282 460 MobiDBLite consensus disorder prediction 231 255 - -
Ahy5g2282 460 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 5 443 - -
Ahy5g2282 460 ProSiteProfiles NAC domain profile. 50 211 IPR003441 GO:0003677|GO:0006355
Ahy5g2282 460 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 443 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2282 Ahy-Chr5 95117311 95123203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2282 13 457 NAC Transcription Factor Family AT5G56620 51.812 7.50e-137 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy5g2282 NAM 1.90E-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2282 - - aip:107641312 770