Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2248 ATGGTGGTAGTAGTGCCAAATCAGGATCACCATCATTCCTCCTTCATCTTCAAAAGGCTCAAGAGGGAGGAATGCAGCCACACCAAACATGATTCTATCTTCTCCAAATGGAAGATTTTAATTGGTGCTTCCGATTGGGAAGATCATTCAAAGGGAAAAGAAGGATGTGCAAGATACAGGATCCATAACCTGCCAGAAAAAGCTTGTCCAGGTGTATATGAGCTTGGAATAGCTGTGTCATCAAGGAGTGATTTGGGGAGGCAAATTTACAAACTTGCCCCTGAGTGTGTAGTTGTGACTTACCTTGGAGAAACTGATAATGTAAGGGATAGGTTGCAATGCTATGGCAGAGATGGATCTCATTTGCACAGCAAAACTTCTCCTGAATACTCAATTTATGATTCTCTCCAAAAGAAGAGGCCATTGTTTCAGGAGATTTTTTCACAGGGATACCCTATTGTTTATAGATGGGTTGCTATGAACAATAAAGAAGAGGCCAAGAGAATAGAGTCTCAGCTGCTCAAAACATTTGATTATGCATGGAATATAAGCAGTAATGGTTGCCGGCGGCCGAACGATATTCTTCAAAAGATAAACAAGATTTCCTCCAGCACAAGAACAATCTCAGATATGGCCAGGGAGCTCCTACCTTTCACCCGAAAACAAGTCGGTATCCGAATTAAAGTAGATGAAGAAGAAGAAGACAGTGATGGCATCTACAGTTTCATATCTAGGGTGTTCAAATTCAACAAATCAAGGCCTAGGAAAGTCGAAAATATCGTCATTGCCAATCAGCAGGATGCTGTAATTTGTGGGGTGGCTTTAGGTGATGGTTCTGTCTGTATAAATACACCAGCTGAAAGAAGAAAGAGGTGTCCTCAACACAAAGGAATGAGAATTAATAATGTGTCCCCTGCCAAAGCATTTGTATCCCCAAAATCAAAGAGCAATTTGGTTTCAGAAATCAATAAGTTTATGGACCAAAATGTTAGCAATGATGATGTACCAGACATTCCAAAAAAACCAGTTGAAGAGAGTAGTAGTAAAACCAATATATGTGGAATCATATTGTATGATGGTTCACCTTGTAGAAGAGTACCGGTTAAAGGAAGGAAAAGGTGCCAAGAGCATAAAGGAAAGAAAATTTATGCCAAGCAGAAGATGATTTAA 1170 0.3991 MVVVVPNQDHHHSSFIFKRLKREECSHTKHDSIFSKWKILIGASDWEDHSKGKEGCARYRIHNLPEKACPGVYELGIAVSSRSDLGRQIYKLAPECVVVTYLGETDNVRDRLQCYGRDGSHLHSKTSPEYSIYDSLQKKRPLFQEIFSQGYPIVYRWVAMNNKEEAKRIESQLLKTFDYAWNISSNGCRRPNDILQKINKISSSTRTISDMARELLPFTRKQVGIRIKVDEEEEDSDGIYSFISRVFKFNKSRPRKVENIVIANQQDAVICGVALGDGSVCINTPAERRKRCPQHKGMRINNVSPAKAFVSPKSKSNLVSEINKFMDQNVSNDDVPDIPKKPVEESSSKTNICGIILYDGSPCRRVPVKGRKRCQEHKGKKIYAKQKMI* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2248 389 Pfam GIY-YIG domain-containing protein 34 195 - -
Ahy5g2248 389 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 17 384 - -
Ahy5g2248 389 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 17 384 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2248 Ahy-Chr5 94524870 94527009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2248 20 384 HRT Transcription Factor Family AT5G56780 41.860 1.80e-92 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Ahy5g2248 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2248 - - adu:107490117 793.882