Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2234 ATGATTGTAATAGACATGAATGACAATCAAATTGAGCTATCATTGAGCAGAGGGTTTTCTACTGGCTACATACTCCATGGATTTCATAATTTGGTCACATGTTATGGACTCAGCCATGGTGGCTGGATGAAGTTACTGTACGTTGGGGAGGACATATTTGTTGTTATGAAGGTGAAGGACAGCTTCATGATGCAGAGAGATTTCTCATATCCAACTTCTAATGTTTTGCACAAAAATAAACCACCAGCCAATCCCCTTTCTGCCCAACAAATGCCACGAGTTTCGACTCCTTCAGATTTGGTTCGTTCGAACTATGCAGATATGCCAGTTCTAGAAGTTAATTTGCAAAATAGCTTTGTACAACAAACTCTACATAATCCCATTGCCACAATACCTTCCCCTACTTCTAACGGGAACACCTCCGAGGTGAGAACTGCCTATAAGAAAGATCTTCAGCTCACAGGCTTCCAGGGACAGGATGGTTTCCTTAGTGCTTCTCCGCTGTCTAAGACTTTTCTTCACAAAGACCTGGACCGCTCCGCTGCGAGCGCGTCACATACCATGCCTAACAAATGCAACAAATTTGGCCAGGATCCAGCCCAAGTTTCCCCACAGGCATCCCCATACTGCAACGGTACCATCAATCATGTTTGTTCCATTACTAAAGTCCAAACTCACGTCCCCAAAAAAGCCGAACCGAACCAGTCCACTACACCGTTAACCACTGCTGGCCCCGACTCAAACATTCAAGGACCTCATGTCTATCGTTTCCTCAAGCTTCTCACTTCCAACCAAGTTAACAACAGTTCCGTGATCATTCCCCTTAGATTTGCTGAGAGTGCATTTCCTAGCAGACACAACCATGTCAAGGTGATTATGGACAATGGCTCTTGCTACCGCATGGGGTTGAGGTGGAGCAAAAAAAAGAAAGCTGGGTTGTATCTTACGCGTGGTTGGAAGCTATTTGCTAAATACAATGGATTGAAATCCGGTACTGTTTTGCAGTTTTCCATTTTTACAAATGACGAGACGACGATGCATGTAAAGATCCTTAAGATGTGA 1062 0.4407 MIVIDMNDNQIELSLSRGFSTGYILHGFHNLVTCYGLSHGGWMKLLYVGEDIFVVMKVKDSFMMQRDFSYPTSNVLHKNKPPANPLSAQQMPRVSTPSDLVRSNYADMPVLEVNLQNSFVQQTLHNPIATIPSPTSNGNTSEVRTAYKKDLQLTGFQGQDGFLSASPLSKTFLHKDLDRSAASASHTMPNKCNKFGQDPAQVSPQASPYCNGTINHVCSITKVQTHVPKKAEPNQSTTPLTTAGPDSNIQGPHVYRFLKLLTSNQVNNSSVIIPLRFAESAFPSRHNHVKVIMDNGSCYRMGLRWSKKKKAGLYLTRGWKLFAKYNGLKSGTVLQFSIFTNDETTMHVKILKM* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2234 353 ProSiteProfiles B3 DNA-binding domain profile. 256 353 IPR003340 GO:0003677
Ahy5g2234 353 Gene3D - 247 353 IPR015300 -
Ahy5g2234 353 Pfam B3 DNA binding domain 257 351 IPR003340 GO:0003677
Ahy5g2234 353 SMART B3_2 257 353 IPR003340 GO:0003677
Ahy5g2234 353 CDD B3_DNA 256 352 IPR003340 GO:0003677
Ahy5g2234 353 MobiDBLite consensus disorder prediction 227 246 - -
Ahy5g2234 353 SUPERFAMILY DNA-binding pseudobarrel domain 252 351 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2234 Ahy-Chr5 94279965 94282235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2234 257 346 REM Transcription Factor Family AT2G24700 27.778 7.62e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy5g2234 B3 3.30E-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2234 - - ahf:112802011 722.235