Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2233 ATGGCAAGCACGTACAACAACCTCAAGGATATTGAGGCATCTTCAGACCACTTAGTATTGAGGATTAAAGTGAGAGTCGTGAAAATATGGTCATTGTCTCCTGCTGAGCAAAAATACGTGAAGCCAACTTTAGAGTTGGTGGTCATGGATCACGTGGGCGATCGAATCCAGTGCACTATTAGGAATGCTCAGAGGAGGCTCTTTGAAGATGAGTTATCGGAGGGAAAAATCTATATCGTTTGTAACTTCTCAACTTCCTTGAATGACCAGAAATACAAGGCCACTAACCATGCATGTAGGATATACTTCAAGAGGGATACTCAACTTCAGATGGTCCATGATCCATCCTTTCCGGAGAATGTGTTTCGTTTTGTTCCTAACGATCTAATACTGAACCACACAAATGCTCAGTCGCATCTTATAGATGTTATTGGTCTACTTACTGGCAAGGGTGACATAATTGAATTTACTAAGAATGGCAAGAAGTGCAGCTACATTGTTCTCGAGCTTGATGACATGCAGGGAAAAGGCAAGATTAGGTGTACACTTTGGGAGGATTTTGCAACTATGTTGGTCAAGCACATTGAAGAGCAGCCAACATCAGAGTACATCATCATTGTACAGTTCGCTAAGTTCAACCTCTTTAAAGGTGCAATGGGCATATCAAATACCAATCATAATTCAATTCTCTACATCAATGCGGACTTCCAAGAGGTTAAGGATTTTCGCAAGAGCGTCGTCCTGGCGGGGGTTCCACGTGCAAACCAACTATCCCAAATTGCTGTGGAGCCAGCGTACTCTATGGAGGATGATCTCATCAATGTCTCCATTTACAAACCCATTTCTGAACTCAAGGCATCCATTGAGAATGGTAGCTTCGTGACAATTGGAACTGTAATTGCAATTGACCCCAAGAACGGTTGGTGGTATAAAAGTTGTAAACATTGCTTTCATTCACTAAAGGAGGCTGAGGATTCCTACTATTGTGCCAAGTGTGCCACCTATCCAACGACTCACACACCCAGGTATAGCATTAATATAAAGGTTGCTGATGATACCGATACGGCTTCATTCCTTCTTTATGACAAGGAAGCGGCCAAATATCTTGGAATCTCTGCCTCTGACCTCAGGCTTGCACAACTAACTAGGGGTGGAGTAAATGAGGAATACCCAATAGAGCTGAATTCCTTTAGGGGTAAGAAATTCCTATTCAAGGTTTCTGTCAAGATGGAAGATCTAAATTCTTTTCAGCCTTGCAAGGTCATTGTGATGAAGATGACTGATGAGATATCGCTTATAACAAAATTTTTAGGAAAGCATGATATATACCAGCAAAACCTTGCACTGGAACACTCAGAACTGTTGAACATGCAAACTGCTTCCACCGACACGCCAAAGTTAAAAATGCAGGGCACGGGTTCTCCTTCTGTTGAGGCGTTGGTGGAAAACTCTAAGGATGCTTTCTCAACCCCCAAGAGAAACATTATTAGTGGTGGATGCTCTAAGCAACTCATTGATCTTTATCCAGACTCTGCTAATGGATCATCATCGAAGTGTAGAAAGCTCGAAGATGGCATTCTCGGAGTTGATAGAGTCTACCAAGATTAG 1608 0.4229 MASTYNNLKDIEASSDHLVLRIKVRVVKIWSLSPAEQKYVKPTLELVVMDHVGDRIQCTIRNAQRRLFEDELSEGKIYIVCNFSTSLNDQKYKATNHACRIYFKRDTQLQMVHDPSFPENVFRFVPNDLILNHTNAQSHLIDVIGLLTGKGDIIEFTKNGKKCSYIVLELDDMQGKGKIRCTLWEDFATMLVKHIEEQPTSEYIIIVQFAKFNLFKGAMGISNTNHNSILYINADFQEVKDFRKSVVLAGVPRANQLSQIAVEPAYSMEDDLINVSIYKPISELKASIENGSFVTIGTVIAIDPKNGWWYKSCKHCFHSLKEAEDSYYCAKCATYPTTHTPRYSINIKVADDTDTASFLLYDKEAAKYLGISASDLRLAQLTRGGVNEEYPIELNSFRGKKFLFKVSVKMEDLNSFQPCKVIVMKMTDEISLITKFLGKHDIYQQNLALEHSELLNMQTASTDTPKLKMQGTGSPSVEALVENSKDAFSTPKRNIISGGCSKQLIDLYPDSANGSSSKCRKLEDGILGVDRVYQD* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2233 535 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 20 419 - -
Ahy5g2233 535 Gene3D - 6 114 IPR012340 -
Ahy5g2233 535 CDD RPA1_DBD_A_like 21 107 - -
Ahy5g2233 535 Gene3D - 116 250 IPR012340 -
Ahy5g2233 535 Gene3D - 273 436 IPR012340 -
Ahy5g2233 535 Pfam Replication factor-A C terminal domain 295 427 IPR013955 -
Ahy5g2233 535 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Ahy5g2233 535 SUPERFAMILY Nucleic acid-binding proteins 289 428 IPR012340 -
Ahy5g2233 535 PANTHER REPLICATION FACTOR A 1, RFA1 20 419 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy5g2233 535 CDD RPA1_DBD_C 281 414 IPR013955 -
Ahy5g2233 535 CDD RPA1_DBD_B_like 142 246 - -
Ahy5g2233 535 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Ahy5g2233 535 SUPERFAMILY Nucleic acid-binding proteins 136 246 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2233 Ahy-Chr5 94274837 94279763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2233 48 423 Core DNA Replication Machinery Family AT5G08020 24.745 1.18e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2233 - - ahf:112707100 1063.14