Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2176 ATGGCTGCCACAGCAACTGCCTCTTCAGTTGGTCCGCGGTATGCACCACCAGACCCTACTTTACCAAAACCATGGCGCGGTCTTGTGGATGGAAAGACTGGTTCCTCTGTCCAGGTTCAACAGTCATCTCAAGGGCAGCAGCGTGGTCGCAGTCCTGAGTTGAGTGATAGGTATGATAGAAACAGTGGAGGTGGGTCAAACAATGAAGGTGGATTGCGCAACTACCAGGAGTCGAAAGGTGGAAATTTTAGCTCTCATAATACTCCAAATGGGATGCATTCTGCTGGAAATGTTAGTTCCTCTATCAAAGGTCAAGGAGCACCAGATACTGGAGTTGGGTTATCTCCAGAGGCTTATCGGCGTCGGCATGAAATTACAGTTACTGGTGATGATGTTCCTCCACCACTTACGTCATTCGGTTCAAGTGGCCTTCCCTCTGAGATTCTTAGAGAGGTACAAAATGCTGGGTTCTCTGCCCCGACTCCAATTCAGGCACAGTCGTGGCCTATTGCTCTTCAAAGTAGAGATATAGTTGCAATTGCTAAAACAGGTTCAGGGAAGACTCTGGGGTATTTAATTCCAGCATTTATTCATCTCAAGCGCACTGGTAATGATCCAAGAATGGGCCCCACAGCATTGGTACTATCACCAACAAGGGAACTGGCAACACAGATTCAAGATGAAGCTGTGAAGTTTGGGAAATCGTCAAAAATTACTTGTGCATGTTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGGGATATTGATCGTGGAGCAGATATTGTGGTAGCCACTCCTGGCCGTTTGAATGATATTCTTGAGATGAGGAGAATTACTCTTAACCAGATTTCTTATCTAGTGCTGGACGAGGCAGACAGGATGCTGGACATGGGCTTTGAGCCTCAAATTAGAAAGATTGTAAATGAGGTGCCTGCTCGTAGGCAAACTCTTATGTATACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGACCTGCTGGTCAATCCCGTTCAGGTGAACATCGGGAATGTAGATGAGCTTGTTGCTAACAAATCTATTACTCAGCATGTTGAAGTATTGACCTACATGGAGAAACAGAGACGACTGGAAAATATTTTGCGGTCACAGGATCAAGGATCTAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTGCACGCCAGTTTGGAGCTGCTGCTATTCACGGGGATAAATCCCAGTCTGAGAGGGACCATGTCTTGAATCAATTTCGGACTGGGAGGTCTCCTGTCCTTGTTGCTACGGATGTTGCAGCTCGAGGATTGGACATTAAAGACATCAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGGAGGACCGGGAGAGCTGGGGCCACTGGTTTGGCATACACTTTCTTTGGGGAGCAGGATGCTAAACATGCTACAGACCTCATCAAAGTCTTGGAAGGTGCAAACCAGCGAGTTCCTCCTGAACTTCGGGATATGTCAGGACGGGGTGGTGGGATGAATAGATCCAGACGATGGGGTTCTTCTGGTTCTGGCCGCGGGGGACGCGGTGACTCTGGATTTGGTGGAAGGAATAATGATTCTGGATACGGTGGAAGGGGTAGTGATTCTGGATACAGTGGAAGGGGTAGTAGTGATGCTGGATATGGTAGCAGAGTTGGCGACTCTAGTTATGGAGGAAAGGGTGGGTGGTCTGCTTCTGGCAGAGGTGGAGGTCGTGGGTCAGACTATGATTCACAGAGGAATGATCGGGCTCGGAGTCCTGACAGGGGATCTAGTTGGAGTGATCGCTTCAAAAACCGTGATCGCAGTCGTAGCCGTAGCCGTAGCCCTGTCAGGGTCCCACCAAATTCCAATGTCAGCTTTCACAAAGCAATGATGGAACGTGGTGGAGGTGATAGTGATCGCAAGGGTTTTAATCGGGACCGAAGCCGCAGTCCTGCCCCCTACAGCAAGGACCGGGCTCCCACTGGTCGCGAACGTTCCCCCCCTTACAGTTTTCATCGCTCTGTTATGGGGCAAGGTCGATCATCCTCCCCATATCGACAGCAGCATGCAGAGGAAAAAGCATTAAGACGCAGTCCTAATCGAAGTTCACCATCCTCTCCTGGTGGTGGTAGATCGAACAATGGTACTCAAAAGGAGTGGGGAGGGTCTCATGGTGACGGGAAGTATGGTGGATCTTCCTATAATGGAGAAGAGGAGGAAGGCATGATACCTGATGAAGAAGGCATGATAGGTCAAGATGATGGTGTATATCAAAATGCAGACTAG 2337 0.4827 MAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGSSVQVQQSSQGQQRGRSPELSDRYDRNSGGGSNNEGGLRNYQESKGGNFSSHNTPNGMHSAGNVSSSIKGQGAPDTGVGLSPEAYRRRHEITVTGDDVPPPLTSFGSSGLPSEILREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRTGNDPRMGPTALVLSPTRELATQIQDEAVKFGKSSKITCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRITLNQISYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLTYMEKQRRLENILRSQDQGSKIIIFCSTKKMCDQLARNLARQFGAAAIHGDKSQSERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGEQDAKHATDLIKVLEGANQRVPPELRDMSGRGGGMNRSRRWGSSGSGRGGRGDSGFGGRNNDSGYGGRGSDSGYSGRGSSDAGYGSRVGDSSYGGKGGWSASGRGGGRGSDYDSQRNDRARSPDRGSSWSDRFKNRDRSRSRSRSPVRVPPNSNVSFHKAMMERGGGDSDRKGFNRDRSRSPAPYSKDRAPTGRERSPPYSFHRSVMGQGRSSSPYRQQHAEEKALRRSPNRSSPSSPGGGRSNNGTQKEWGGSHGDGKYGGSSYNGEEEEGMIPDEEGMIGQDDGVYQNAD* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2176 778 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 342 IPR014001 -
Ahy5g2176 778 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 165 IPR014014 GO:0003724
Ahy5g2176 778 Pfam DEAD/DEAH box helicase 161 331 IPR011545 GO:0003676|GO:0005524
Ahy5g2176 778 Pfam Helicase conserved C-terminal domain 368 476 IPR001650 -
Ahy5g2176 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 492 IPR027417 -
Ahy5g2176 778 SMART ultradead3 156 359 IPR014001 -
Ahy5g2176 778 Gene3D - 115 346 IPR027417 -
Ahy5g2176 778 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 99 608 - -
Ahy5g2176 778 MobiDBLite consensus disorder prediction 716 737 - -
Ahy5g2176 778 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 515 IPR001650 -
Ahy5g2176 778 MobiDBLite consensus disorder prediction 507 778 - -
Ahy5g2176 778 MobiDBLite consensus disorder prediction 60 106 - -
Ahy5g2176 778 MobiDBLite consensus disorder prediction 33 51 - -
Ahy5g2176 778 MobiDBLite consensus disorder prediction 1 115 - -
Ahy5g2176 778 CDD SF2_C_DEAD 356 485 - -
Ahy5g2176 778 Gene3D - 347 517 IPR027417 -
Ahy5g2176 778 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 288 296 IPR000629 -
Ahy5g2176 778 MobiDBLite consensus disorder prediction 597 630 - -
Ahy5g2176 778 MobiDBLite consensus disorder prediction 649 680 - -
Ahy5g2176 778 SMART helicmild6 396 476 IPR001650 -
Ahy5g2176 778 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 99 608 - -
Ahy5g2176 778 MobiDBLite consensus disorder prediction 551 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2176 Ahy-Chr5 92713817 92719488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2176 135 514 Eukaryotic Initiation Factors Gene Family AT3G19760 33.594 4.76e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2176 K12823 - gmx:100786511 1009.21