Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2161 ATGGACGTTACAAAACGTAGCTCCGTCTTCACCCAAATCGCTTCAAGGGAGCTCAATTCCTTCCGAGTTCGCAAACGGCCTTACATGGATGGATTCGTCACTGGATTCGTGGAACACGGTGCTGTTGGAGTTCACCACAGCGAAGATGGTACCATTCCCATGTCCCTCTCTTTCTGTAAGACTCCCAAATATTCACACATTCTGGCTTTATCTGATGAAGATGGATACCTAACCTTATTTGATTCGCGTAAAAAATTCTCCGTATTATCCTCGTTTGAAGAAAATGCAGAGAAAGCGAAGATCTGTGAGTGGGTTTCTCATCTTAATGCCGTGTTTGATATCTGTTGGATTAAGGAAGACACACAGATACTCACAGCTTCTGGTGATCAAACAATGAAGGTATGGGATGTACAAGAAAAGAAATGTATTGGAGTGTTGACGGGGCACACAGGGAGTGTGAAGTCTATGTGTGCTCATCCAAATAATGCTGATATTATTGTCTCTGGTTCAAGAGATGGATCCTTTTGTCTCTGGGACTTAAGATGCAAATCGGCAACTAGGGGTAGACATGGAGAAGTTAGCATATGTTCAACGGCTGTTGTCAAAGGAGCACATCTTTCATCTCAAGCAAAACGTGTCAGAAAGGGCAAGGCCAAGTCCATGAGCATTACATCTGTTCTTTGTCTTAAGGACCAGGTTTCCATAGCCACTGCAGGGGCAGTGGATAGTGTGTTGAAGTTTTGGGATACCAGAAATTTGAAAAGTTTTGTTACACAGGCATCTCCTCGTCCTCAGTCAACAGAAAAGGAAAGATTACATGGCATATCTAGCTTGTCCCAAGATGAAAGTGGTCTTTTTCTTTCAGCATCCTGCATGGATAACTGCATTTATCTGTATAGCATCCTTCAACTTGACAAGGGGCCTTTCAGATCTTTTCCTGGTTGTCCCATAGAATCATTTTTTGTCAAGGCTGCCATTAGCCCAGATGCGTCTCAAATAGTCAGCGGTTCTAGTAATGGAAATGCCTATGTCTGGCAGGTTAACAAGCCCCAAGCGACGCCTGTTATTTTGAAAAGTCATGATGCGGAGGTTACAGCAGTTGACTGGAACCGCTCTGAGATTGGTAAATTAGCAACTGCATCAGATGATTGCACAGTTCGGATTTGGAACCAAACCAATTATATCTGCGACAAAAAGACTTCATGTTCCATCCGCAGAAGAGTAATGGCAATGCCTTGTACAGAAAGCAAAATTCTACTGAACAATGAAGAAAAGTATCTCAAGTCAATAGACAATGAATCATTAGATCCCCCAATTAAGTTAGCCACTCCAATCACTCCACCTAAAATTCTTGCACCTGAAGGGTGGCACAAGAACAAGCTGCCCTCAGGATTCAATCAAACTTCATCATCTGAAAAGACTCCAGAATCTGCTTTGAAGAGCCCCTCATCTGTTTTGAACCCTCCATCTTCCTTGAAAAGAACTATCCGGGACTACTTTTTGGCATCTTCATGA 1515 0.429 MDVTKRSSVFTQIASRELNSFRVRKRPYMDGFVTGFVEHGAVGVHHSEDGTIPMSLSFCKTPKYSHILALSDEDGYLTLFDSRKKFSVLSSFEENAEKAKICEWVSHLNAVFDICWIKEDTQILTASGDQTMKVWDVQEKKCIGVLTGHTGSVKSMCAHPNNADIIVSGSRDGSFCLWDLRCKSATRGRHGEVSICSTAVVKGAHLSSQAKRVRKGKAKSMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSFVTQASPRPQSTEKERLHGISSLSQDESGLFLSASCMDNCIYLYSILQLDKGPFRSFPGCPIESFFVKAAISPDASQIVSGSSNGNAYVWQVNKPQATPVILKSHDAEVTAVDWNRSEIGKLATASDDCTVRIWNQTNYICDKKTSCSIRRRVMAMPCTESKILLNNEEKYLKSIDNESLDPPIKLATPITPPKILAPEGWHKNKLPSGFNQTSSSEKTPESALKSPSSVLNPPSSLKRTIRDYFLASS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2161 504 MobiDBLite consensus disorder prediction 461 491 - -
Ahy5g2161 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 390 IPR001680 GO:0005515
Ahy5g2161 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Ahy5g2161 504 Gene3D - 40 186 IPR015943 GO:0005515
Ahy5g2161 504 PANTHER BNAA06G31940D PROTEIN 2 502 - -
Ahy5g2161 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Ahy5g2161 504 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 2 502 - -
Ahy5g2161 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Ahy5g2161 504 Pfam WD domain, G-beta repeat 105 136 IPR001680 GO:0005515
Ahy5g2161 504 Pfam WD domain, G-beta repeat 356 390 IPR001680 GO:0005515
Ahy5g2161 504 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Ahy5g2161 504 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Ahy5g2161 504 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Ahy5g2161 504 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Ahy5g2161 504 Gene3D - 187 424 IPR015943 GO:0005515
Ahy5g2161 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 181 IPR001680 GO:0005515
Ahy5g2161 504 SUPERFAMILY WD40 repeat-like 64 401 IPR036322 GO:0005515
Ahy5g2161 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 390 - -
Ahy5g2161 504 MobiDBLite consensus disorder prediction 452 491 - -
Ahy5g2161 504 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Ahy5g2161 504 SMART WD40_4 139 179 IPR001680 GO:0005515
Ahy5g2161 504 SMART WD40_4 305 346 IPR001680 GO:0005515
Ahy5g2161 504 SMART WD40_4 97 136 IPR001680 GO:0005515
Ahy5g2161 504 SMART WD40_4 265 300 IPR001680 GO:0005515
Ahy5g2161 504 SMART WD40_4 209 249 IPR001680 GO:0005515
Ahy5g2161 504 SMART WD40_4 350 390 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2161 Ahy-Chr5 92400952 92406107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2161 107 345 U-box Gene Family AT1G04510 24.521 1.69e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2161 K11790 - gmx:100819114 711.835