Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2158 ATGGACCAAAATCCCAACTTTGTTCCTGGCAAGATATATATACGCGGTTTATCACCAGCCACAGAACATGATGAAGTTAGGATGTACTTTTCTAAATATGGCAAGGTTAAGAGTTGTACCGTCAGGGAGGACCGCAACCCGCGCCGGAATCTCAGAGTCGGGTTTGTAACTTTTAAAGATGTCTCTGTGGTTGATAGAGTCATAGTGGAGAATCATATTATTGATGGTTGTCAGGTTACGGTTGAAAGATGCCTTGGGGAAAGGAATGTTGATGATACGTTTCCGGAAAACACACTTTATGTTTATGGAATTCCTGGAAATGTGTCTCCAGGTTTTTTGGCAAATTTCTTTAGTGATTATGGACCAGTCGTTTTATGCAGCATAGAAAGGGAAAAAGGCCATGGATACATTTACTTTGAGTCTCCTCAGCAAGTTGATGATCTTATAGCACGTTTTGGGAATTGGATTAATTTTCATGGATATAAATTGGAAATAAGCAAGCATCTCCAAAATAGGGGACCAACGCTTCCATGTAGGGTAAGTGTTCCATTGAATGCTGCTAGAGCCGATCCTGGTCGAATGGCTGTTTCTAACCCGGCCGGGGGAAGCACGTCGAGTGGCAGGGTGGTCCAAAATCAGTTGTGGCAACCTTATGGAAGCTATGGTACTATGGTACCCTCTGTAGCATTTCCTAATTCCATTGGTCATGGACAATACAATGATGTTCCTATAGAAGCAGGAGGGCAAGGTGGTGGTGCAATGAGACAGAATATTTCTACTTTTGCTGGCCATCGCCGCGGCCAAGCCAATGTCTCTCAAGGGGCTAGTAGTAGTGGAGGTGGTGCCTTGAATGCTGGCCATCATGATAATCCAAAGGTGTCAATGGAATAG 891 0.44 MDQNPNFVPGKIYIRGLSPATEHDEVRMYFSKYGKVKSCTVREDRNPRRNLRVGFVTFKDVSVVDRVIVENHIIDGCQVTVERCLGERNVDDTFPENTLYVYGIPGNVSPGFLANFFSDYGPVVLCSIEREKGHGYIYFESPQQVDDLIARFGNWINFHGYKLEISKHLQNRGPTLPCRVSVPLNAARADPGRMAVSNPAGGSTSSGRVVQNQLWQPYGSYGTMVPSVAFPNSIGHGQYNDVPIEAGGQGGGAMRQNISTFAGHRRGQANVSQGASSSGGGALNAGHHDNPKVSME* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2158 296 Gene3D - 6 90 IPR012677 -
Ahy5g2158 296 MobiDBLite consensus disorder prediction 265 296 - -
Ahy5g2158 296 SUPERFAMILY RNA-binding domain, RBD 10 87 IPR035979 GO:0003676
Ahy5g2158 296 SMART rrm1_1 98 166 IPR000504 GO:0003723
Ahy5g2158 296 SMART rrm1_1 11 82 IPR000504 GO:0003723
Ahy5g2158 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 162 IPR000504 GO:0003723
Ahy5g2158 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 69 IPR000504 GO:0003723
Ahy5g2158 296 PANTHER OS08G0320100 PROTEIN 8 270 - -
Ahy5g2158 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 183 IPR000504 GO:0003723
Ahy5g2158 296 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 8 270 - -
Ahy5g2158 296 MobiDBLite consensus disorder prediction 265 280 - -
Ahy5g2158 296 Gene3D - 91 173 IPR012677 -
Ahy5g2158 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Ahy5g2158 296 SUPERFAMILY RNA-binding domain, RBD 89 177 IPR035979 GO:0003676
Ahy5g2158 296 CDD RRM_SF 99 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2158 Ahy-Chr5 92313726 92315768 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2158 12 181 Eukaryotic Initiation Factors Gene Family AT4G34110 23.316 4.79e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2158 - - ahf:112801934 594.349