Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g2156 ATGGACTCTGCCGGCAACGAACAATTCGTCGGTGGCGGAGAACCCTTCTCCCACAGAGAAGACGAACACGAACACCAACACCACAGAAGAGAAGATGAAGAAGACGAAGAACACGAGCATCACCACAATTCTCAACCTCTTTCTGGAGATGGTGCTAGCCCTGGAAAGATATTTATAGGTGGTTTAGCAAGAGATACGACCGTAGCCCAATTTGTGAAGCACTTTGGTAAATATGGTGAGATTACGGACTCTGTGATCATGAAGGACCGCAAAACCGGCCAGCCTCGTGGATTCGGGTTTATAACTTACGCTGATCCCTCTGTGGTTGATAAAGTCATTGAGGACAATCATGTTATCAATGGCAAACAGGTTGAGATTAAGCGCACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAACTGTGACTGAAGATGAGTTTAGAGACTTTTTTACGCGCTATGGAGAAGTCAAGGATCACCAAATAATGAGGGACCACTCCACCAATCGTTCTCGAGGATTTGGGTTTATCACCTTCGACTCTGAGGAAGCTGTTGATGATCTGCTGTCCATGGGGAACAGGATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACCCACCACCTACGTCATCCAAGCGTTATAATGACTCAAGGTCTTCATATGGTGGTGGATACGGAGATGCTTATGATGGATTTGGTGGCAGCTTTGGTGTTGGTGGTTATCGGTCAGGTGGCATGTACGGTGGTAGGAGTGGTGCTTATGGTGGCTATGGAAGTGAATTCAGCGGGTATGGAGGATATGCCGGTGCAATGGGGCCCTACAGAGGAGATCCTTCCTTGGGATATGCTGGTCGTTACGGTGGTGGAGGCTTTAGCCGAGGCTATGATCTTGGCGGGTATGGTGGAGCTAGTGAGAATTATGGGGCATATGGCGGTGCTGCTGCTGGAGGTGGTTCTTCTGCTGGTGGTGCCTATCAAACTGGCTATGGTGCTGGACTAGGTGGCGGATATGGAGGGGCTAGCGGAGGCTCCTTTTATGGGAGTAGAGGAGGATATGGTGCTGGTCGATATCATCCTTATGGAAGGTAG 1149 0.4874 MDSAGNEQFVGGGEPFSHREDEHEHQHHRREDEEDEEHEHHHNSQPLSGDGASPGKIFIGGLARDTTVAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDNHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNRIEFAGAQVEIKKAEPKKPNPPPTSSKRYNDSRSSYGGGYGDAYDGFGGSFGVGGYRSGGMYGGRSGAYGGYGSEFSGYGGYAGAMGPYRGDPSLGYAGRYGGGGFSRGYDLGGYGGASENYGAYGGAAAGGGSSAGGAYQTGYGAGLGGGYGGASGGSFYGSRGGYGAGRYHPYGR* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g2156 382 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 24 382 - -
Ahy5g2156 382 SMART rrm1_1 56 127 IPR000504 GO:0003723
Ahy5g2156 382 SMART rrm1_1 144 217 IPR000504 GO:0003723
Ahy5g2156 382 MobiDBLite consensus disorder prediction 215 237 - -
Ahy5g2156 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 131 IPR000504 GO:0003723
Ahy5g2156 382 SUPERFAMILY RNA-binding domain, RBD 44 133 IPR035979 GO:0003676
Ahy5g2156 382 Gene3D - 143 226 IPR012677 -
Ahy5g2156 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 213 IPR000504 GO:0003723
Ahy5g2156 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 124 IPR000504 GO:0003723
Ahy5g2156 382 Gene3D - 15 138 IPR012677 -
Ahy5g2156 382 MobiDBLite consensus disorder prediction 14 45 - -
Ahy5g2156 382 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 24 382 - -
Ahy5g2156 382 MobiDBLite consensus disorder prediction 1 58 - -
Ahy5g2156 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Ahy5g2156 382 SUPERFAMILY RNA-binding domain, RBD 139 251 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g2156 Ahy-Chr5 92290256 92293718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g2156 48 203 Eukaryotic Initiation Factors Gene Family AT1G71770 25.287 2.25e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g2156 K12741 - gmx:100793209 407.142